Merge branch 'master' of https://github.com/insysbio/sbml-heta-cases

.github/workflows/build-and-simulate.yml

@@ -19,10 +19,11 @@ jobs:
         platform: [ ubuntu-latest ]
 
     runs-on: [self-hosted,Julia] # ${{ matrix.platform }}
-
+    timeout-minutes: 1440
     defaults:
           run:
             shell: bash
+
     steps:
     - name: Checkout
       uses: actions/checkout@v2
@@ -38,7 +39,6 @@ jobs:
         npm i -g https://github.com/insysbio/heta-compiler.git
     - run: |
         heta build
-        heta_version=`heta -v`
     #- name: Setup Julia environment (disabled for self-hosted server)
     #  uses: julia-actions/[email protected]
     #  with:
@@ -48,7 +48,7 @@ jobs:
     - name: SimSolver installation
       run: julia -e 'using Pkg;Pkg.activate(".");Pkg.add(url="https://${{ secrets.SIMSOLVER_GITLAB_TOKEN }}@gitlab.insysbio.com/dev-group/simsolver", rev="dev");Pkg.build()'
     - name: Run Julia simulations
-      run: julia ./run.jl $heta_version
+      run: julia ./run.jl `heta -v`
     - name: Copy files to "static"
       run: |
         mkdir -p ./result/cases/output

.github/workflows/copy-visualization.yml

@@ -21,11 +21,11 @@ jobs:
       uses: actions/checkout@v2
       with:
         persist-credentials: false
-    - name: Copy results (TEMPORAL)
-      run: | 
-        mkdir -p ./static/cases/output
-        cp -rf ./cases/output/*.png ./static/cases/output/ | true
-        cp -f ./results.json ./static/  | true
+    #- name: Copy results (TEMPORAL)
+    #  run: | 
+    #    mkdir -p ./static/cases/output
+    #    cp -rf ./cases/output/*.png ./static/cases/output/ | true
+    #    cp -f ./results.json ./static/  | true
     - name: Deploy to "result" branch only for "master" and "*-result" pushes
       uses: JamesIves/github-pages-deploy-action@releases/v3
       with:

.gitignore

@@ -3,9 +3,9 @@
 /cases/semantic/*/output.json
 /cases/semantic/*/julia
 /cases/output/*.csv
-#/cases/output/*.png
+/cases/output/*.png
 /build.log
-#/results.json
+/results.json
 
 /cases/semantic/julia
 /cases/semantic/json.json