possible bug?

[marwa38]

Hi team
I think something weird is happening.
I have checked my input Excel file (attached) to find the total is different for some variables.

Check for example stimulus.up and stimulus.down (same for all others) in both the figure and table, one number higher in the figure than the Excel for each.
degs_matrix_human.xlsx

Is that a bug?

Side note, can't show the set size of the first from the down element, decreasing the size of the text is not working.

my codes

degs_matrix <- read_excel("degs_matrix_human.xlsx")
degs_matrix <- degs_matrix[1:6]
gene.list <- as.list(degs_matrix)
tiff("UpSet_woPyloric.tiff", width = 13, height = 7, units = "in", res = 600)  # Open the TIFF device
upset(fromList(gene.list), order.by = "freq", nsets = 6, nintersects = NA, text.scale = 2.8,
      set_size.show = T, set_size.numbers_size = 6)
dev.off()

Thanks in advance

[Ax3man]

NAs are being included in the count. If you use lapply(gene.list, na.omit) your set sizes shrink by one.