Feature: Added Ontology ID and label for Body (#190 #198)

* Id and label added for body * Code smells * Code smells Co-authored-by: Vutukuri Sai Ajay <[email protected]>
hubmapconsortium · Jul 22, 2021 · 023bd1f · 023bd1f
1 parent 8f3a0c9
commit 023bd1f
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Showing 2 changed files with 15 additions and 6 deletions.
diff --git a/projects/v2/src/app/services/sheet.service.ts b/projects/v2/src/app/services/sheet.service.ts
@@ -112,7 +112,11 @@ export class SheetService {
    * @param data is the parsed ASCTB data from the csv file of the sheet
    */
   getDataWithBody(data: any) {
-    const organ: Structure = { name: 'Body', id: '' };
+    const organ: Structure = {
+      name: 'Body',
+      id: 'UBERON:0013702',
+      rdfs_label: 'body proper'
+    };
     data.forEach((row) => {
       row.anatomical_structures.unshift(organ);
     });

diff --git a/projects/v2/src/app/store/sheet.state.ts b/projects/v2/src/app/store/sheet.state.ts
@@ -151,6 +151,8 @@ export class SheetStateModel {
 export class SheetState {
   constructor(private sheetService: SheetService) { }
   faliureMsg = 'Failed to fetch data';
+  bodyId = 'UBERON:0013702';
+  bodyLabel: 'body proper';
 
   /**
    * Returns an observable that watches the data
@@ -305,7 +307,8 @@ export class SheetState {
 
     const organ: Structure = {
       name: 'Body',
-      id: '',
+      id: this.bodyId,
+      rdfs_label: this.bodyLabel,
     };
 
     for await (const [_unused, sheet] of compareData.entries()) {
@@ -403,8 +406,8 @@ export class SheetState {
             row.organName = organsNames[i];
             const newStructure: Structure = {
               name: 'Body',
-              id: '',
-              rdfs_label: 'NONE',
+              id: this.bodyId,
+              rdfs_label: this.bodyLabel,
             };
             row.anatomical_structures.unshift(newStructure);
           }
@@ -664,7 +667,8 @@ export class SheetState {
     const state = getState();
     const organ: Structure = {
       name: 'Body',
-      id: '',
+      id: this.bodyId,
+      rdfs_label: this.bodyLabel,
     };
 
     return this.sheetService.fetchPlaygroundData().pipe(
@@ -725,7 +729,8 @@ export class SheetState {
     );
     const organ: Structure = {
       name: 'Body',
-      id: '',
+      id: this.bodyId,
+      rdfs_label: this.bodyLabel,
     };
 
     return this.sheetService.updatePlaygroundData(data).pipe(