Add numpy to pre-release dependency build to test against numpy 2.0

.github/workflows/tests.yml

@@ -26,7 +26,6 @@ jobs:
         DEPENDENCIES_PRE_RELEASE: [false]
         DEPENDENCIES_NUMBA_DEV: [false]
         USE_MAMBA: [true]
-        PYTHON_VERSION: ['3.11']
         include:
           # test against upstream dev
           - DEPENDENCIES_DEV: true
@@ -41,7 +40,6 @@ jobs:
             # see https://scientific-python.org/specs/spec-0004/
             DEPENDENCIES: matplotlib scipy scikit-image scikit-learn
             USE_MAMBA: false
-            PYTHON_VERSION: '3.11'
           - DEPENDENCIES_PRE_RELEASE: true
             # Install RC version available on pypi
             LABEL: -dependencies_pre_release
@@ -50,7 +48,6 @@ jobs:
             EXTENSION_VERSION: 'dev'
             DEPENDENCIES: matplotlib scipy scikit-learn sympy h5py scikit-image numba
             USE_MAMBA: false
-            PYTHON_VERSION: '3.11'
           - DEPENDENCIES_NUMBA_DEV: true
             # Install dev version from numba/label/dev channel using mamba
             LABEL: -dependencies_numba_dev
@@ -59,11 +56,11 @@ jobs:
             EXTENSION_VERSION: 'dev'
             DEPENDENCIES: numba
             USE_MAMBA: true
-            PYTHON_VERSION: '3.11'
 
     env:
       EXTENSION: hyperspy-gui-ipywidgets hyperspy-gui-traitsui kikuchipy lumispy pyxem exspy holospy
       TEST_DEPS: pytest pytest-xdist pytest-rerunfailures pytest-mpl filelock
+      PYTHON_VERSION: '3.12'
     defaults:
       run:
         shell: bash -l {0}
@@ -74,20 +71,21 @@ jobs:
       - uses: conda-incubator/setup-miniconda@v3
         with:
           miniforge-version: latest
-          python-version: ${{ matrix.PYTHON_VERSION }}
+          python-version: ${{ env.PYTHON_VERSION }}
           # use base environment, so that when using pip, this is from the
           # miniforge distribution
           # auto-activate-base: true
           activate-environment: "test"
 
-      - name: Install pip pyqt and Test dependencies
+      - name: Install pip, pyqt, orix and Test dependencies
         run: |
-          mamba install pip pyqt ${{ env.TEST_DEPS }}
+          mamba install pip pyqt orix ${{ env.TEST_DEPS }}
 
-      - name: Install numpy 1.x
+      - name: Install dask 2024.11.2
         run: |
-          # remove when pyxem support numpy 2
-          mamba install numpy=1
+          # remove when tests failure with dask >=2024.12.0 are sorted
+          # https://github.com/hyperspy/rosettasciio/issues/345
+          mamba install dask-core=2024.8.0
 
       - name: Conda info
         run: |
@@ -179,7 +177,8 @@ jobs:
       - name: Run RosettaScio Test Suite
         if: ${{ always() }}
         run: |
-          python -m pytest --pyargs rsciio -n 2
+          # mrcz and pyusid doesn't support numpy 2
+          python -m pytest --pyargs rsciio -n 1 -k "not test_mrcz.py and not test_usid.py and not TestOperate"
 
       - name: Run hyperspy_gui_ipywidgets Test Suite
         if: ${{ always() }}
@@ -202,13 +201,13 @@ jobs:
         run: |
           python -m pytest --pyargs holospy
 
-      - name: Run kikuchipy Test Suite
-        if: ${{ always() }}
-        # Run the tests headlessly.
-        # Unskip test when https://github.com/pyxem/kikuchipy/issues/707 is fixed and
-        # released.
-        run: |
-          xvfb-run python -m pytest --pyargs kikuchipy -k "not test_not_allow_download_raises"
+      # - name: Run kikuchipy Test Suite
+      #   if: ${{ always() }}
+      #   # Run the tests headlessly (pyvista)
+      #   # Unskip test when https://github.com/pyxem/kikuchipy/issues/707 is fixed and
+      #   # released.
+      #   run: |
+      #     xvfb-run python -m pytest --pyargs kikuchipy -k "not test_not_allow_download_raises"
 
       - name: Run LumiSpy Test Suite
         if: ${{ always() }}