Runr full implementation draft #261
Annotations
2 errors and 23 warnings
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Run BiocCheck
there is no package called ‘BiocCheck’
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Run BiocCheck
Process completed with exit code 1.
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.20/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.20/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.20/books/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.20/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.20/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Query dependencies
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Run CMD check
Undocumented code objects:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.20/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.20/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.20/books/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install macOS system dependencies
harfbuzz 9.0.0 is already installed and up-to-date.
To reinstall 9.0.0, run:
brew reinstall harfbuzz
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Install macOS system dependencies
fribidi 1.0.15 is already installed and up-to-date.
To reinstall 1.0.15, run:
brew reinstall fribidi
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Install macOS system dependencies
macOS's Gatekeeper has been disabled for this Cask
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