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ialbert committed Mar 29, 2024
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Expand Up @@ -73,12 +73,12 @@ In the next step, GeneScape visualizes the GO terms as the graph structure that

Various colors are used to provide additional context to the nodes in the graph; for example, functions derived from the input genes are colored green. The intermediate nodes are colored by their category.

Since the resulting graphs may also be large, with thousands of nodes, the main interface provides reactive interface elements to allow users to
Since the resulting graphs may also be large, with thousands of nodes, the main interface provides input widgets that allow users to interactively
reduce the subgraph to nodes for which:

1. The function definitions match word patterns
2. A minimum number of genes share the function,
3. Nodes are within a specific GO subtree: Biological Process, Molecular Function, Cellular Component
1. The function definitions match certain patterns
2. A minimum number of genes share a function,
3. Nodes belong to a specific GO subtree: Biological Process (BP), Molecular Function (MF), Cellular Component (CC)

In addition, users can zoom in and out of the tree. The software's command-line version supports generating outputs in various formats, such as PDF or PNG.

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