preparing for 1.0

ialbert · May 21, 2024 · 4ca77d8 · 4ca77d8
1 parent 90efd42
commit 4ca77d8
Show file tree

Hide file tree

Showing 5 changed files with 7 additions and 18 deletions.
diff --git a/Makefile b/Makefile
@@ -31,7 +31,7 @@ usage:
 
 # Performs the testing.
 web:
-	shiny run --reload genescape.shiny.tree.app:app --factory
+	shiny run --reload genescape.shiny.tree.app:app
 
 # Tag and push to repository.
 tag: test

diff --git a/src/genescape/__about__.py b/src/genescape/__about__.py
@@ -1 +1 @@
-__version__ = "0.9.5"
+__version__ = "0.9.8"
diff --git a/src/genescape/shiny/tree/app.py b/src/genescape/shiny/tree/app.py
@@ -418,16 +418,17 @@ async def download_dot():
 app_shiny = App(app_ui, server)
 
 
-def app():
+def web_app():
     routes = [
         Mount('/static', app=app_static),
         Mount('/', app=app_shiny)
     ]
 
-    webapp = Starlette(routes=routes)
+    web = Starlette(routes=routes)
 
-    return webapp
+    return web
 
+app = web_app()
 
 if __name__ == '__main__':
     import shiny

diff --git a/src/genescape/shiny/tree/rsconnect-python/shiny.json b/src/genescape/shiny/tree/rsconnect-python/shiny.json
diff --git a/test/test_genescape.py b/test/test_genescape.py
@@ -66,7 +66,7 @@ def test_genescape(inp_name, out_name, cmd):
         raise AssertionError(f"content mismatch: {out_name}")
 
 
-@pytest.mark.parametrize("cmd", ["build -s", "annotate -t -o test/out/genescape.csv", "tree -t -o test/out/genescape.pdf"])
+@pytest.mark.parametrize("cmd", ["build -s --idx src/genescape/data/human.index.gz", "annotate -t -o test/out/genescape.csv", "tree -t -o test/out/genescape.pdf"])
 def test_run(cmd):
 
     full = f"{cmd}"