Skip to content

Commit

Permalink
update
Browse files Browse the repository at this point in the history
  • Loading branch information
ialbert committed Mar 28, 2024
1 parent 7c311b4 commit 82815ae
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions docs/paper.md
Original file line number Diff line number Diff line change
Expand Up @@ -27,9 +27,9 @@ The Gene Ontology (GO) [@Ashburner2000], [@GO2023] is a structured vocabulary t

For example, in the GO data, `GO:0090630` defines *activation of GTPase activity* and is a child of `GO:0043547`, which is a *positive regulation of GTPase activity* that in turn is a child of `GO:0051345` representing a *positive regulation of hydrolase activity*.

Gene association files (GAF) are text files used to annotate an organism's gene products with Gene Ontology terms, thereby associating a function with a gene product. For example, a GAF file connects a gene product label such as `ZC3H11B` with multiple GO terms, such as `GO:0046872` or `GO:0016973`. As an example the human genome GAF representation contains 288,575 associations of 19,606 gene symbols over 18,680 GO terms.
Gene association files (GAF) are text files used to annotate an organism's gene products with Gene Ontology terms, thereby associating a function with a gene product. For example, a GAF file connects a gene product label such as `ZC3H11B` with multiple GO terms, such as `GO:0046872` or `GO:0016973`. The complete human genome GAF representation contains 288,575 associations of 19,606 gene symbols over 18,680 GO terms.

The [Gene Ontology Consortium]GO] maintains GAF files for various organisms. These GO and GAF datasets are used by all processes that interpret genomic data in a functional context. Typical data genomic analysis protocols generate gene lists that must be placed into a functional context.
The [Gene Ontology Consortium][GO] maintains GAF files for various organisms. These GO and GAF datasets are used by all processes that interpret genomic data in a functional context. Typical data genomic analysis protocols generate gene lists that must be placed into a functional context.

[GO]: https://geneontology.org/

Expand Down

0 comments on commit 82815ae

Please sign in to comment.