Merge pull request #86 from JCGiron/main

Edit to update 'interpunctural distance'
insect-morphology · May 11, 2024 · 76da675 · 76da675
2 parents 6b2e520 + f10dd5d
commit 76da675
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diff --git a/aism-base.json b/aism-base.json
@@ -40,9 +40,9 @@
         "val" : "https://creativecommons.org/licenses/by/4.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2024-03-16"
+        "val" : "2024-05-11"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/aism/releases/2024-03-16/aism-base.json"
+      "version" : "http://purl.obolibrary.org/obo/aism/releases/2024-05-11/aism-base.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/AISM_0000000",
@@ -2795,11 +2795,11 @@
       "type" : "CLASS",
       "meta" : {
         "definition" : {
-          "val" : "The anatomical space adjacent to two cuticular punctures."
+          "val" : "The distance between two cuticular punctures."
         },
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
-          "val" : "Definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188"
+          "val" : "Edited by jgiron https://orcid.org/0000-0002-0851-6883 \n2024-05-11\nTo make it a distance as opposed to an anatomical space and change 'adjacent to' for 'characteristic of'\nMatching existing definitions e.g. http://purl.obolibrary.org/obo/AGRO_00000318\n\nFormer definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188"
         } ]
       }
     }, {

diff --git a/aism-base.obo b/aism-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: aism/releases/2024-03-16/aism-base.owl
+data-version: aism/releases/2024-05-11/aism-base.owl
 ontology: aism/aism-base
 property_value: http://purl.org/dc/elements/1.1/contributor "Giulio Montanaro (gmontanaro) https://orcid.org/0000-0003-0836-1364" xsd:string
 property_value: http://purl.org/dc/elements/1.1/contributor "István Mikó (imiko) https://orcid.org/0000-0003-2938-9075" xsd:string
@@ -13,7 +13,7 @@ property_value: http://purl.org/dc/terms/license https://creativecommons.org/lic
 property_value: IAO:0000700 "http://purl.obolibrary.org/obo/AISM_0000174" xsd:string
 property_value: IAO:0000700 "http://purl.obolibrary.org/obo/PATO_0000001" xsd:string
 property_value: IAO:0000700 "http://purl.obolibrary.org/obo/UBERON_0001062" xsd:string
-property_value: owl:versionInfo "2024-03-16" xsd:string
+property_value: owl:versionInfo "2024-05-11" xsd:string
 
 [Term]
 id: AISM:0000000
@@ -2266,8 +2266,8 @@ relationship: parallel_to AISM:0000377 {http://purl.org/dc/elements/1.1/contribu
 [Term]
 id: AISM:0000376
 name: interpunctural distance {creation_date="2023-06-04", IAO:0000232="Moved from COLAO to AISM: 2023-05-08\ngmontanaro https://orcid.org/0000-0003-0836-1364", http://purl.org/dc/elements/1.1/contributor="gmontanaro https://orcid.org/0000-0003-0836-1364"}
-def: "The anatomical space adjacent to two cuticular punctures." [] {creation_date="2023-06-04", http://purl.org/dc/elements/1.1/contributor="gmontanaro https://orcid.org/0000-0003-0836-1364"}
-property_value: IAO:0000232 "Definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188" xsd:string {http://purl.org/dc/elements/1.1/contributor="jgiron https://orcid.org/0000-0002-0851-6883", creation_date="2024-02-14"}
+def: "The distance between two cuticular punctures." [] {creation_date="2023-06-04", http://purl.org/dc/elements/1.1/contributor="gmontanaro https://orcid.org/0000-0003-0836-1364"}
+property_value: IAO:0000232 "Edited by jgiron https://orcid.org/0000-0002-0851-6883 \n2024-05-11\nTo make it a distance as opposed to an anatomical space and change 'adjacent to' for 'characteristic of'\nMatching existing definitions e.g. http://purl.obolibrary.org/obo/AGRO_00000318\n\nFormer definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188" xsd:string {http://purl.org/dc/elements/1.1/contributor="jgiron https://orcid.org/0000-0002-0851-6883", creation_date="2024-02-14"}
 
 [Term]
 id: AISM:0000377

diff --git a/aism-base.owl b/aism-base.owl
@@ -38,7 +38,7 @@
      xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
      xmlns:caloha-reqs-vetted="http://purl.obolibrary.org/obo/caloha-reqs-vetted#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/aism/aism-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/aism/releases/2024-03-16/aism-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/aism/releases/2024-05-11/aism-base.owl"/>
         <obo:IAO_0000700>http://purl.obolibrary.org/obo/AISM_0000174</obo:IAO_0000700>
         <obo:IAO_0000700>http://purl.obolibrary.org/obo/PATO_0000001</obo:IAO_0000700>
         <obo:IAO_0000700>http://purl.obolibrary.org/obo/UBERON_0001062</obo:IAO_0000700>
@@ -51,7 +51,7 @@
         <x_1.1:title xml:lang="en">Ontology for the Anatomy of the Insect SkeletoMuscular system</x_1.1:title>
         <x_1.1:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
         <term:license rdf:resource="https://creativecommons.org/licenses/by/4.0/"/>
-        <owl:versionInfo>2024-03-16</owl:versionInfo>
+        <owl:versionInfo>2024-05-11</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -17943,15 +17943,20 @@ gmontanaro https://orcid.org/0000-0003-0836-1364</obo:IAO_0000232>
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/AISM_0000376">
         <rdfs:subClassOf rdf:nodeID="genid2677"/>
-        <obo:IAO_0000115 xml:lang="en">The anatomical space adjacent to two cuticular punctures.</obo:IAO_0000115>
-        <obo:IAO_0000232 xml:lang="en">Definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188</obo:IAO_0000232>
+        <obo:IAO_0000115 xml:lang="en">The distance between two cuticular punctures.</obo:IAO_0000115>
+        <obo:IAO_0000232 xml:lang="en">Edited by jgiron https://orcid.org/0000-0002-0851-6883 
+2024-05-11
+To make it a distance as opposed to an anatomical space and change &apos;adjacent to&apos; for &apos;characteristic of&apos;
+Matching existing definitions e.g. http://purl.obolibrary.org/obo/AGRO_00000318
+
+Former definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188</obo:IAO_0000232>
         <rdfs:label xml:lang="en">interpunctural distance</rdfs:label>
     </owl:Class>
     <owl:Class rdf:nodeID="genid2677">
         <owl:intersectionOf rdf:parseType="Collection">
-            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000464"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000040"/>
             <owl:Restriction>
-                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002220"/>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/AISM_0000524"/>
             </owl:Restriction>
         </owl:intersectionOf>
@@ -17966,14 +17971,19 @@ gmontanaro https://orcid.org/0000-0003-0836-1364</obo:IAO_0000232>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/AISM_0000376"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget xml:lang="en">The anatomical space adjacent to two cuticular punctures.</owl:annotatedTarget>
+        <owl:annotatedTarget xml:lang="en">The distance between two cuticular punctures.</owl:annotatedTarget>
         <x_1.1:contributor>gmontanaro https://orcid.org/0000-0003-0836-1364</x_1.1:contributor>
         <oboI:creation_date>2023-06-04</oboI:creation_date>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/AISM_0000376"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000232"/>
-        <owl:annotatedTarget xml:lang="en">Definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188</owl:annotatedTarget>
+        <owl:annotatedTarget xml:lang="en">Edited by jgiron https://orcid.org/0000-0002-0851-6883 
+2024-05-11
+To make it a distance as opposed to an anatomical space and change &apos;adjacent to&apos; for &apos;characteristic of&apos;
+Matching existing definitions e.g. http://purl.obolibrary.org/obo/AGRO_00000318
+
+Former definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188</owl:annotatedTarget>
         <x_1.1:contributor>jgiron https://orcid.org/0000-0002-0851-6883</x_1.1:contributor>
         <oboI:creation_date>2024-02-14</oboI:creation_date>
     </owl:Axiom>
@@ -45927,6 +45937,12 @@ starasov https://orcid.org/0000-0001-5237-2330</obo:IAO_0000232>
 
 
 
+    <!-- http://purl.obolibrary.org/obo/PATO_0000040 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000040"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/PATO_0000052 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000052"/>
@@ -46137,12 +46153,6 @@ starasov https://orcid.org/0000-0001-5237-2330</obo:IAO_0000232>
 
 
 
-    <!-- http://purl.obolibrary.org/obo/UBERON_0000464 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000464"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/UBERON_0000955 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000955"/>

diff --git a/aism-full.json b/aism-full.json
@@ -37,9 +37,9 @@
         "val" : "https://creativecommons.org/licenses/by/4.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2024-03-16"
+        "val" : "2024-05-11"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/aism/releases/2024-03-16/aism-full.json"
+      "version" : "http://purl.obolibrary.org/obo/aism/releases/2024-05-11/aism-full.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/IAO_0000002",
@@ -3161,11 +3161,11 @@
       "type" : "CLASS",
       "meta" : {
         "definition" : {
-          "val" : "The anatomical space adjacent to two cuticular punctures."
+          "val" : "The distance between two cuticular punctures."
         },
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
-          "val" : "Definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188"
+          "val" : "Edited by jgiron https://orcid.org/0000-0002-0851-6883 \n2024-05-11\nTo make it a distance as opposed to an anatomical space and change 'adjacent to' for 'characteristic of'\nMatching existing definitions e.g. http://purl.obolibrary.org/obo/AGRO_00000318\n\nFormer definition based on suggestions at https://github.com/obophenotype/uberon/issues/3188"
         } ]
       }
     }, {
@@ -158479,9 +158479,6 @@
         }, {
           "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
           "val" : "has_characteristic"
-        }, {
-          "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
-          "val" : "https://github.com/oborel/obo-relations/pull/284"
         } ]
       }
     }, {
@@ -164349,6 +164346,12 @@
         }, {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
           "val" : "See github ticket https://github.com/oborel/obo-relations/issues/497"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0001-9625-1899"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-2620-0345"
         }, {
           "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
           "val" : "2021-11-08T12:00:00Z"
@@ -305123,10 +305126,6 @@
       "sub" : "http://purl.obolibrary.org/obo/GO_0008150",
       "pred" : "is_a",
       "obj" : "http://purl.obolibrary.org/obo/BFO_0000015"
-    }, {
-      "sub" : "http://purl.obolibrary.org/obo/GO_0008150",
-      "pred" : "http://purl.obolibrary.org/obo/BFO_0000051",
-      "obj" : "http://purl.obolibrary.org/obo/GO_0003674"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0008152",
       "pred" : "is_a",
@@ -315350,7 +315349,7 @@
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0042391",
       "pred" : "is_a",
-      "obj" : "http://purl.obolibrary.org/obo/BFO_0000015"
+      "obj" : "http://purl.obolibrary.org/obo/BFO_0000003"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0042391",
       "pred" : "http://purl.obolibrary.org/obo/BFO_0000051",
@@ -332731,6 +332730,10 @@
       "sub" : "http://purl.obolibrary.org/obo/GO_0099738",
       "pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
       "obj" : "http://purl.obolibrary.org/obo/GO_0005938"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/GO_0100001",
+      "pred" : "is_a",
+      "obj" : "http://purl.obolibrary.org/obo/BFO_0000015"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0100001",
       "pred" : "is_a",
@@ -426416,10 +426419,6 @@
         "sub" : "http://purl.obolibrary.org/obo/BFO_0000004",
         "pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
         "obj" : "http://purl.obolibrary.org/obo/BFO_0000004"
-      }, {
-        "sub" : "http://purl.obolibrary.org/obo/BFO_0000015",
-        "pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
-        "obj" : "http://purl.obolibrary.org/obo/BFO_0000015"
       }, {
         "sub" : "http://purl.obolibrary.org/obo/BFO_0000017",
         "pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
@@ -426437,13 +426436,6 @@
         "pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
         "obj" : "http://purl.obolibrary.org/obo/BFO_0000031"
       } ]
-    }, {
-      "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000051",
-      "allValuesFromEdges" : [ {
-        "sub" : "http://purl.obolibrary.org/obo/BFO_0000020",
-        "pred" : "http://purl.obolibrary.org/obo/BFO_0000051",
-        "obj" : "http://purl.obolibrary.org/obo/BFO_0000020"
-      } ]
     }, {
       "predicateId" : "http://purl.obolibrary.org/obo/RO_0002162",
       "allValuesFromEdges" : [ {
@@ -426883,7 +426875,7 @@
       "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ]
     }, {
       "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057",
-      "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003", "http://purl.obolibrary.org/obo/BFO_0000015" ],
+      "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ],
       "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ]
     }, {
       "predicateId" : "http://purl.obolibrary.org/obo/RO_0000079",