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Merge pull request I2PC#505 from I2PC/v1.0
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Added v1.0.1 release notes to CHANGELOG.md
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delarosatrevin authored Jul 4, 2016
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## v1.0.1 (2016-06-30)

- Several protocol fixes:
- Fixed bug when creating the output for Frealign (in some cases some information from input particles was not properly propagated)
- Fixed some bugs in movie alignment protocols (summovie and unblur) and tests added
- Some minor bugs fixed in Relion protocols
- Bugs fixed in Resmap protocol when using two half volumes
- Fixed several bugs in Spider protocols:
- converting input particles with alignment
- wrong regular expression for replacing some variables in script template
- parsing of the resulting dendrogram
- some additional validations and removed unused code
- Bugfixes and inprovements in Xmipp protocols:
- Protocols screen-classes merged into one: compare-reprojections
- Complete refactoring of operate-particles and operate-volumes protocols (previously called 2D and 3D calculator). Tests added
- Picking and Viewer:
- Warning if particles are picked in a temporary folder and the SetOfParticles was not created
- Improved implementation of assign-tiltpairs protocol in Xmipp and some refactoring of picking methods
- Fixed bug that caused GUI to freeze sometimes
- Some bugs fixed when displaying and exporting particles
- Sorting arrows displayed after sorting by a column. Hourglass displayed while sorting.
- Some bug fixed when creating subset from classes
- Other fixes or improvements:
- ImageHandler's methods convert and writeStack now accepts alignment parameters
- Fixed bug when displaying Movies summary (sqlite files were not closed)
- Fixed bug when spawning Eman process to write particles
- Added REMOTE_MESA_LIB environment var for using OpenGL in remote desktops
- Created a LegacyProtocol class to read deprecated protocols
- Cleanup in some tests and added new ones for core classes or functions

## v1.0.0 (2016-02-20) Augusto

- Allows to combine several EM software packages (~ 100 protocols):
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