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Connectivity_matrix_connect update#489

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kyralianaka wants to merge 16 commits intomainjaxleyverse/jaxley:mainfrom connmat_connectjaxleyverse/jaxley:connmat_connectCopy head branch name to clipboard

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Commits on Nov 7, 2024

• Fixed bug in connectivity_matrix_connect, added test, and removed rand selection of compartments

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• remerged with main

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Commits on Nov 8, 2024

• More explanatory variable names and test for single comp cells

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• test updates, accidentally not in last commit

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• Removed random selection of post-synaptic compartments, fixed test bug in sparse connect, standardized connection functions

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• Black on connect.py

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• Standardized fully_connect even a little bit more

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Commits on Nov 18, 2024

• Added back option to randomly select post-synaptic compartment in standard way without looping

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Commits on Nov 20, 2024

• Fixed docstrings and comments

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Commits on Nov 22, 2024

• Update branch with main changes

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Commits on Nov 25, 2024

• Updated sparse connectivity function to not use full adj mat, removed scoping, and added function for random post-comp selection

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• Cleaning up sparse connect a bit

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Commits on Feb 24, 2025

• Merge branch 'main' into connmat_connect

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• Updated with main, reverted sparse_connect function, folded in random comp choosing func for efficiency, updated sparse test

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Commits on Feb 25, 2025

• Removed raise if sparse probability too low and added/updated connection tests

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• Added replacement in post comp sampling in case nconn > ncomps

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