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Achievements

Achievement: Starstruckx2Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Starstruckx2Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@nf-core @SPAAM-community @sidora-tools @poseidon-framework

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jfy133/README.md

Hi there 👋, my name is James

I am a bioinformatician / research software engineer, specialising in Nextflow pipelines and (ancient) metagenomics

My GitHub Stats

🤖 I like pipelines, metadata, standards, documenting, and community projects!

🧬 My current research focus is currently on improving throughput and reproducibility of (ancient) metagenomic analysis, and developing standards for (meta)data archiving and reporting of ancient DNA sequencing data.

👪 I'm currently a core-team member of the nf-core initative of standardised Nextflow pipelines and I established the SPAAM-community of ancient metagenomics researchers and the MInAS intiative.

Skills

nextflow

r

bioconda

bash

git

linux


Research

orcid google-scholar


Contact

mastodon linked-in website


Current projects

Static Badge Static Badge Static Badge Static Badge Static Badge

See my pinned repositories

Mastodon

Pinned Loading

  1. nf-core/mag nf-core/mag Public

    Assembly and binning of metagenomes

    Nextflow 225 115

  2. nf-core/funcscan nf-core/funcscan Public

    (Meta-)genome screening for functional and natural product gene sequences

    Nextflow 77 22

  3. nf-core/taxprofiler nf-core/taxprofiler Public

    Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

    Nextflow 134 38

  4. nf-core/eager nf-core/eager Public

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

    Nextflow 155 82

  5. SPAAM-community/AncientMetagenomeDir SPAAM-community/AncientMetagenomeDir Public

    Repository containing lists of all published ancient metagenomic (and related) samples and libraries

    HTML 68 33

  6. MIxS-MInAS/MInAS MIxS-MInAS/MInAS Public

    Repository of proposed and combined MIxS + MInAS standardised metadata checklists using LinkML

    Python