update

jlinaresb · Jan 19, 2023 · a104d3c · a104d3c
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diff --git a/...hmark/code/preciseads/feature_selection.r → ...code/01_preprocessing/feature_selection.r b/...hmark/code/preciseads/feature_selection.r → ...code/01_preprocessing/feature_selection.r
diff --git a/benchmark/code/preciseads/lch_fs.sh → benchmark/code/01_preprocessing/lch_fs.sh b/benchmark/code/preciseads/lch_fs.sh → benchmark/code/01_preprocessing/lch_fs.sh
diff --git a/benchmark/code/preciseads/config_file.r → benchmark/code/02_clustering/config_file.r b/benchmark/code/preciseads/config_file.r → benchmark/code/02_clustering/config_file.r
diff --git a/benchmark/code/preciseads/launch.sh → benchmark/code/02_clustering/launch.sh b/benchmark/code/preciseads/launch.sh → benchmark/code/02_clustering/launch.sh
diff --git a/...mark/code/preciseads/run/multi/run_coca.r → ...hmark/code/02_clustering/multi/run_coca.r b/...mark/code/preciseads/run/multi/run_coca.r → ...hmark/code/02_clustering/multi/run_coca.r
diff --git a/...e/preciseads/run/multi/run_hierarchical.r → ...de/02_clustering/multi/run_hierarchical.r b/...e/preciseads/run/multi/run_hierarchical.r → ...de/02_clustering/multi/run_hierarchical.r
diff --git a/.../code/preciseads/run/multi/run_icluster.r → ...k/code/02_clustering/multi/run_icluster.r b/.../code/preciseads/run/multi/run_icluster.r → ...k/code/02_clustering/multi/run_icluster.r
diff --git a/...rk/code/preciseads/run/multi/run_kmeans.r → ...ark/code/02_clustering/multi/run_kmeans.r b/...rk/code/preciseads/run/multi/run_kmeans.r → ...ark/code/02_clustering/multi/run_kmeans.r
diff --git a/...rk/code/preciseads/run/multi/run_mclust.r → ...ark/code/02_clustering/multi/run_mclust.r b/...rk/code/preciseads/run/multi/run_mclust.r → ...ark/code/02_clustering/multi/run_mclust.r
diff --git a/...hmark/code/preciseads/run/multi/run_nmf.r → benchmark/code/02_clustering/multi/run_nmf.r b/...hmark/code/preciseads/run/multi/run_nmf.r → benchmark/code/02_clustering/multi/run_nmf.r
diff --git a/...hmark/code/preciseads/run/multi/run_snf.r → benchmark/code/02_clustering/multi/run_snf.r b/...hmark/code/preciseads/run/multi/run_snf.r → benchmark/code/02_clustering/multi/run_snf.r
diff --git a/...hmark/code/preciseads/run/multi/run_som.r → benchmark/code/02_clustering/multi/run_som.r b/...hmark/code/preciseads/run/multi/run_som.r → benchmark/code/02_clustering/multi/run_som.r
diff --git a/benchmark/code/preciseads/parallelization.r → ...mark/code/02_clustering/parallelization.r b/benchmark/code/preciseads/parallelization.r → ...mark/code/02_clustering/parallelization.r
diff --git a/...de/preciseads/run/single/run_expression.r → ...ode/02_clustering/single/run_expression.r b/...de/preciseads/run/single/run_expression.r → ...ode/02_clustering/single/run_expression.r
diff --git a/...e/preciseads/run/single/run_methylation.r → ...de/02_clustering/single/run_methylation.r b/...e/preciseads/run/single/run_methylation.r → ...de/02_clustering/single/run_methylation.r
diff --git a/benchmark/code/launch_1.sh b/benchmark/code/launch_1.sh
diff --git a/benchmark/code/launch_2.sh b/benchmark/code/launch_2.sh
diff --git a/benchmark/code/launch_3.sh b/benchmark/code/launch_3.sh
diff --git a/benchmark/code/launch_4.sh b/benchmark/code/launch_4.sh
diff --git a/benchmark/code/launch_5.sh b/benchmark/code/launch_5.sh
diff --git a/benchmark/code/launch_multiomic.sh b/benchmark/code/launch_multiomic.sh
diff --git a/benchmark/code/launch_preciseads.sh b/benchmark/code/launch_preciseads.sh
diff --git a/benchmark/code/launch_prepro.sh b/benchmark/code/launch_prepro.sh
diff --git a/benchmark/code/launch_singleomic.sh b/benchmark/code/launch_singleomic.sh
diff --git a/benchmark/code/multi-omic/preprocess_multiomic.r b/benchmark/code/multi-omic/preprocess_multiomic.r
diff --git a/benchmark/code/multi-omic/run_multiomic_GSE117931.r b/benchmark/code/multi-omic/run_multiomic_GSE117931.r
diff --git a/benchmark/code/multi-omic/run_multiomic_GSE82221.r b/benchmark/code/multi-omic/run_multiomic_GSE82221.r
diff --git a/benchmark/code/single-omic/run_benchmark_epi.r b/benchmark/code/single-omic/run_benchmark_epi.r
diff --git a/benchmark/code/single-omic/run_benchmark_meta.r b/benchmark/code/single-omic/run_benchmark_meta.r