Network analysis of cell line XXXX based on several perturbations

Current stage

Getting Started

There are several steps to run this analyisis:

1. Identify proteins of interest
2. Identify drug targets
3. Create the network
4. CyTOF data
5. Run CellNOpt

Prerequisites:

You must install the following packages in R:

install.packages(c("ggplot2", "dplyr", "ggraph", "igraph"))

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install(c("OmnipathR", "CellNOptR"))

How to run

Clone this repository:

git clone https://github.com/jlinaresb/network-cytof.git