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Update setup.py with the correct tag version
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lmanan committed Apr 17, 2021
1 parent 8439a78 commit 5407ab0
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16 changes: 15 additions & 1 deletion README.md
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Expand Up @@ -29,7 +29,21 @@ If you find our work useful in your research, please consider citing:
### Dependencies
We have tested this implementation using `pytorch` version 1.1.0 and `cudatoolkit` version 10.0 on a `linux` OS machine.

In order to replicate results mentioned in the publication, one could use the same virtual environment (`EmbedSeg_environment.yml`) as used by us. Create a new environment, for example, by entering the python command in the terminal `conda env create -f path/to/EmbedSeg_environment.yml`.
In order to replicate results mentioned in the publication, one could use the same virtual environment (`environment.yml`) as used by us. Create a new environment using (this would also install `pytorch`):

```conda env create -f path/to/environment.yml```.

Alternately, one could install `EmbedSeg` with `pip`:

```
conda create -n EmbedSegEnv python==3.7
python3 -m pip install EmbedSeg
```

and then install `[pytorch](https://pytorch.org/get-started/previous-versions/)`:
```
conda install pytorch==1.1.0 torchvision==0.3.0 cudatoolkit=10.0 -c pytorch
```

### Getting Started

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4 changes: 2 additions & 2 deletions setup.py
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Expand Up @@ -6,8 +6,8 @@
long_description = fh.read()

setup(
name="EmbedSeg39",
version="1.0.1",
name="EmbedSeg",
version="0.2.0",
author="Manan Lalit, Pavel Tomancak, Florian Jug",
author_email="[email protected]",
description="EmbedSeg provides automatic detection and segmentation of objects in microscopy images",
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