Merge branch 'documentation'

jwallen · Apr 5, 2013 · 0d88183 · 0d88183
2 parents 362167d + d1f54d7
commit 0d88183
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diff --git a/documentation/source/_static/default.css b/documentation/source/_static/default.css
@@ -36,7 +36,7 @@ div.bodywrapper {
 
 div.body {
     color: #000000;
-    padding: 0px 10px 0px 10px;
+    padding: 0px 10px 10px 10px;
 }
 
 div.footer {
@@ -109,6 +109,7 @@ div.sphinxsidebar p {
 
 div.sphinxsidebar p.topless {
     margin: 5px 10px 10px 10px;
+    word-wrap: break-word;
 }
 
 div.sphinxsidebar ul {

diff --git a/documentation/source/conf.py b/documentation/source/conf.py
@@ -86,6 +86,9 @@
 # A list of ignored prefixes for module index sorting.
 #modindex_common_prefix = []
 
+# A list of default flags for automatically documented items.
+autodoc_default_flags = ['members', 'inherited-members']
+
 
 # -- Options for HTML output ---------------------------------------------------
 

diff --git a/documentation/source/contents.rst b/documentation/source/contents.rst
@@ -18,6 +18,7 @@ Contents
     users/index
     developers/index
     theory/index
+    reference/index
 
 Indices and tables
 ==================

diff --git a/documentation/source/developers/cantherm/geometry.rst b/documentation/source/developers/cantherm/geometry.rst
diff --git a/documentation/source/developers/cantherm/index.rst b/documentation/source/developers/cantherm/index.rst
diff --git a/documentation/source/developers/chemkin.rst b/documentation/source/developers/chemkin.rst
diff --git a/documentation/source/developers/data/base.rst b/documentation/source/developers/data/base.rst
diff --git a/documentation/source/developers/data/index.rst b/documentation/source/developers/data/index.rst
diff --git a/documentation/source/developers/data/introduction.rst b/documentation/source/developers/data/introduction.rst
diff --git a/documentation/source/developers/data/kinetics.rst b/documentation/source/developers/data/kinetics.rst
diff --git a/documentation/source/developers/data/states.rst b/documentation/source/developers/data/states.rst
diff --git a/documentation/source/developers/data/statesfit.rst b/documentation/source/developers/data/statesfit.rst
diff --git a/documentation/source/developers/data/thermo.rst b/documentation/source/developers/data/thermo.rst
diff --git a/documentation/source/developers/index.rst b/documentation/source/developers/index.rst
@@ -7,18 +7,4 @@ RMG Developer's Guide
     :numbered:
 
     introduction
-    chemkin
-    kinetics/index
-    quantities/index
-    reaction
-    species
-    statmech/index
-    thermo/index
-    molecule/index
-    cantherm/index
-    data/index
-    measure/index
-    pdep/index
-    rmg/index
-    solver/index
 
diff --git a/documentation/source/developers/kinetics/arrhenius.rst b/documentation/source/developers/kinetics/arrhenius.rst
diff --git a/documentation/source/developers/kinetics/chebyshev.rst b/documentation/source/developers/kinetics/chebyshev.rst