Merge pull request #75 from kaybenleroll/talk-genai

Talk genai

talk_chatbot_genai_202411/.dockerignore

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+README.md
+
+data/*
+
+scraped_files/*
+
+.Rproj.user/*
+
+nlp_workshop.Rproj
+
+*.qmd
+*.html

talk_chatbot_genai_202411/.gitignore

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+.Rproj.user
+
+output.log
+
+temp*.R
+
+*_files/*
+*_cache/*

talk_chatbot_genai_202411/Dockerfile

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+FROM rocker/tidyverse:4.4.1
+
+WORKDIR /tmp
+
+COPY build/docker_install_sys_rpkgs.R /tmp
+RUN Rscript /tmp/docker_install_sys_rpkgs.R
+
+RUN git clone https://github.com/lindenb/makefile2graph.git \
+  && cd makefile2graph \
+  && make \
+  && make install
+
+
+RUN apt-get update \
+  && apt-get upgrade -y \
+  && apt-get install -y --no-install-recommends \
+    byobu \
+    clang \
+    ditaa \
+    graphviz \
+    htop \
+    less \
+    libclang-dev \
+    libglpk-dev \
+    libgsl-dev \
+    libnlopt-dev \
+    p7zip-full \
+    pbzip2 \
+  && apt-get clean \
+  && rm -rf /var/lib/apt/lists/* \
+  && mkdir -p $HOME/.R \
+  && echo "" > $HOME/.R/Makevars \
+  && echo "CXX=clang++"                                            >> $HOME/.R/Makevars \
+  && echo "CXXFLAGS=-Os"                                           >> $HOME/.R/Makevars \
+  && echo "CXXFLAGS+= -Wno-unused-variable -Wno-unused-function"   >> $HOME/.R/Makevars \
+  && echo "CXXFLAGS+= -Wno-unknown-pragmas -Wno-macro-redefined"   >> $HOME/.R/Makevars \
+  && echo ""                                                       >> $HOME/.R/Makevars \
+  && echo "CXX14=clang++"                                          >> $HOME/.R/Makevars \
+  && echo "CXX14FLAGS=-Os"                                         >> $HOME/.R/Makevars \
+  && echo "CXX14FLAGS+= -Wno-unused-variable -Wno-unused-function" >> $HOME/.R/Makevars \
+  && echo "CXX14FLAGS+= -Wno-unknown-pragmas -Wno-macro-redefined" >> $HOME/.R/Makevars \
+  && echo ""                                                       >> $HOME/.R/Makevars \
+  && install2.r --error \
+    anytime \
+    conflicted \
+    cowplot \
+    DataExplorer \
+    directlabels \
+    fs \
+    loo \
+    markdown \
+    parallelly \
+    pryr \
+    quarto \
+    sessioninfo \
+    snakecase \
+    tictoc
+
+
+RUN cp -r $HOME/.R /home/rstudio \
+  && chown -R rstudio:rstudio /home/rstudio/.R
+
+
+WORKDIR /home/rstudio
+USER rstudio
+
+COPY build/conffiles.7z /tmp
+RUN 7z x /tmp/conffiles.7z       \
+  && cp conffiles/.bash*     .   \
+  && cp conffiles/.gitconfig .   \
+  && cp conffiles/.Renviron  .   \
+  && cp conffiles/.Rprofile  .   \
+  && mkdir -p .config/rstudio    \
+  && cp conffiles/rstudio-prefs.json .config/rstudio/  \
+  && rm -rfv conffiles/ \
+  && touch /home/rstudio/.bash_eternal_history
+
+COPY build/docker_install_user_rpkgs.R /tmp
+RUN Rscript /tmp/docker_install_user_rpkgs.R
+
+
+USER root
+
+RUN chown -R rstudio:rstudio /home/rstudio
+

talk_chatbot_genai_202411/Makefile

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+### repo variables
+PROJECT_USER=kaybenleroll
+PROJECT_NAME=talk_chatbot_genai
+PROJECT_TAG=latest
+
+IMAGE_TAG=${PROJECT_USER}/${PROJECT_NAME}:${PROJECT_TAG}
+
+DOCKER_USER=rstudio
+DOCKER_PASS=CHANGEME
+DOCKER_UID=$(shell id -u)
+DOCKER_GID=$(shell id -g)
+
+RSTUDIO_PORT=8787
+
+PROJECT_FOLDER=genai_talk
+
+
+### Set GITHUB_USER with 'gh config set gh_user <<user>>'
+GITHUB_USER=$(shell gh config get gh_user)
+
+CONTAINER_NAME=genai-talk
+
+### Project build targets
+.SUFFIXES: .qmd .html .dot .png
+
+QMD_FILES  := $(wildcard *.qmd)
+HTML_FILES := $(patsubst %.qmd,%.html,$(RMD_FILES))
+
+all-html: $(HTML_FILES)
+
+.qmd.html:
+	echo "TIMESTAMP:" `date` "- Rendering script $<"  >> output.log 2>&1
+	Rscript -e 'quarto::quarto_render("$<")'          >> output.log 2>&1
+	echo "TIMESTAMP:" `date` "- Finished $*.html"     >> output.log 2>&1
+
+
+.dot.png:
+	dot -Tpng -o$*.png $<
+
+full_deps.dot:
+	makefile2graph all-html > full_deps.dot
+
+depgraph: full_deps.png
+
+
+
+
+mrproper: clean-cache clean-data clean-html clean-models
+	rm -fv data/*.xlsx
+	rm -fv *.dot
+	rm -fv output.log
+
+clean-data:
+	rm -fv data/*.rds
+	rm -fv data/*.csv
+
+clean-html:
+	rm -fv *.html
+
+clean-cache:
+	rm -rfv *_cache
+	rm -rfv *_files
+
+clean-models:
+	rm -fv stan_models/*
+
+
+### Docker targets
+docker-build-image: Dockerfile
+	docker build -t ${IMAGE_TAG} -f Dockerfile .
+
+docker-run:
+	docker run --rm -d \
+	  -p ${RSTUDIO_PORT}:8787 \
+	  -e USER=${DOCKER_USER} \
+	  -e PASSWORD=${DOCKER_PASS} \
+	  -e USERID=${DOCKER_UID} \
+	  -e GROUPID=${DOCKER_GID} \
+	  -v "${PWD}":"/home/${DOCKER_USER}/${PROJECT_FOLDER}":rw \
+	  --name ${CONTAINER_NAME} \
+	  ${IMAGE_TAG}
+
+docker-bash:
+	docker exec -it -u ${DOCKER_USER} ${CONTAINER_NAME} bash
+
+docker-stop:
+	docker stop ${CONTAINER_NAME}
+
+docker-rm:
+	docker rm ${CONTAINER_NAME}
+
+docker-start:
+	docker start ${CONTAINER_NAME}
+
+docker-clean: docker-stop-all
+	docker rm $(shell docker ps -q -a)
+
+docker-pull:
+	docker pull ${IMAGE_TAG}

talk_chatbot_genai_202411/build/docker_install_sys_rpkgs.R

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+

talk_chatbot_genai_202411/build/test_report.qmd

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+---
+title: "Temporary Quarto Document"
+author: "Mick Cooney <[email protected]>"
+date: "`r Sys.Date()`"
+---
+
+
+```{r knit_opts, include = FALSE}
+library(tidyverse)
+
+options(
+  width = 80L,
+  warn  = 1
+  )
+
+set.seed(42)
+```

talk_chatbot_genai_202411/genai_talk.Rproj

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+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: knitr
+LaTeX: pdfLaTeX
+
+AutoAppendNewline: Yes
+StripTrailingWhitespace: Yes
+
+BuildType: Makefile

talk_chatbot_genai_202411/lib_utils.R

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+resolve_conflicts <- function(pkg_priority) {
+  get_index <- function(pkg_name) {
+    idx <- str_which(pkg_priority, pkg_name)
+
+    if(length(idx) == 0) { idx <- 0L }
+
+    return(idx)
+  }
+
+  conflict_lst <- conflict_scout()
+
+  for(func_name in names(conflict_lst)) {
+    pkg_index <- map_int(conflict_lst[[func_name]], get_index)
+
+    pkg_index <- pkg_index[pkg_index > 0]
+
+    if(length(pkg_index) == 0) {
+      pkg_use <- conflict_lst[[func_name]][1]
+    } else {
+      pkg_use <- pkg_priority[pkg_index |> min()]
+    }
+
+    conflict_prefer(func_name, pkg_use)
+  }
+
+  return(conflict_lst)
+}
+
+
+gamma_mucv2shaperate <- function(mu, cv) {
+  shape <- 1 / (cv^2)
+  rate  <- 1 / (cv^2 * mu)
+
+  return(c(shape = shape, rate = rate))
+}
+
+
+gamma_shaperate2mucv <- function(shape, rate) {
+  mu <- shape / rate
+  cv <- 1 / sqrt(shape)
+
+  return(c(mu = mu, cv = cv))
+}
+
+
+rgamma_mucv <- function(n, mu, cv, ...) {
+  params <- gamma_mucv2shaperate(mu, cv)
+
+  rgamma(n = n, shape = params[1], rate = params[2], ...)
+}
+

talk_chatbot_genai_202411/styles.css

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+* {
+text-align: center;
+}
+
+.reveal table {
+  font-size: 80%;
+}
+
+.custom-small table {
+  font-size: .5em
+}
+
+h1.title {
+  background-image: url(img/describedata.png), url(img/fourtheorem.png);
+  background-repeat: no-repeat;
+  background-position: left, right;
+  background-size: 300px, 300px;
+}