genus

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Steps needed to run wrap.py

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Set up python

wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
bash Miniconda2-latest-Linux-x86_64.sh
conda create -p /PHShome/ysa2/genus_env python pip # this is just an example path
cd /PHShome/ysa2/genus_env # just an example
source activate .
conda install pip pytables matplotlib scikit-learn seaborn pandas statsmodels cython sympy networkx 
pip install nibabel nipy nipype scipy numpy

Optional

vi ~/.bashrc

# add the line below

alias genv="source activate /PHShome/ysa2/genus_env"

• save and exit. source ~/.bashrc and now genv

Matlab dependencies

• download both from the links below, make sure to run the install.m file in the varbvs download. this will require a gcc version of 4.7.x

https://github.com/pcarbo/varbvs/tree/c24049a5bc9532dae4f7f2d81df50ca877a47a6d http://www.gaussianprocess.org/gpml/code/matlab/doc/