add Pkg

Project.toml

@@ -8,6 +8,7 @@ Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
 CustomUnitRanges = "dc8bdbbb-1ca9-579f-8c36-e416f6a65cce"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
+Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Requires = "ae029012-a4dd-5104-9daa-d747884805df"
 Sockets = "6462fe0b-24de-5631-8697-dd941f90decc"

conf/ompi_rootenv.patch

@@ -0,0 +1,29 @@
+Allow override environment variables to work. This is required for running as root inside a docker container (e.g. Gitlab CI)
+
+Upstream: https://github.com/open-mpi/ompi/pull/6895
+
+--- a/orte/tools/orterun/orterun.c
++++ b/orte/tools/orterun/orterun.c
+@@ -143,6 +143,14 @@ int orterun(int argc, char *argv[])
+      * exit with a giant warning flag
+      */
+     if (0 == geteuid() && !orte_cmd_options.run_as_root) {
++        char *r1, *r2;
++        if (NULL != (r1 = getenv("OMPI_ALLOW_RUN_AS_ROOT")) &&
++            NULL != (r2 = getenv("OMPI_ALLOW_RUN_AS_ROOT_CONFIRM"))) {
++            if (0 == strcmp(r1, "1") && 0 == strcmp(r2, "1")) {
++                goto moveon;
++            }
++        }
++
+         fprintf(stderr, "--------------------------------------------------------------------------\n");
+         if (NULL != orte_cmd_options.help) {
+             fprintf(stderr, "%s cannot provide the help message when run as root.\n", orte_basename);
+@@ -160,6 +168,7 @@ int orterun(int argc, char *argv[])
+         exit(1);
+     }
+
++  moveon:
+     /* setup to listen for commands sent specifically to me, even though I would probably
+      * be the one sending them! Unfortunately, since I am a participating daemon,
+      * there are times I need to send a command to "all daemons", and that means *I* have

conf/travis-install-mpi.sh

@@ -0,0 +1,89 @@
+#!/bin/sh
+# This configuration file was taken originally from the mpi4py project
+# <http://mpi4py.scipy.org/>, and then modified for Julia
+
+set -e
+set -x
+
+MPI_IMPL="$1"
+os=`uname`
+OMPIVER=openmpi-3.0.0
+MPICHVER=mpich-3.2.1
+IMPIVER=2019.4.243
+case "$os" in
+    Darwin)
+        brew update
+        brew upgrade cmake
+        case "$MPI_IMPL" in
+            mpich|mpich3)
+                brew install mpich
+                ;;
+            openmpi)
+                brew install openmpi
+                ;;
+            *)
+                echo "Unknown MPI implementation: $MPI_IMPL"
+                exit 1
+                ;;
+        esac
+    ;;
+
+    Linux)
+        sudo apt-get update -q
+        case "$MPI_IMPL" in
+            mpich1)
+                sudo apt-get install -y gfortran mpich-shmem-bin libmpich-shmem1.0-dev
+                ;;
+            mpich2)
+                sudo apt-get install -y gfortran mpich2 libmpich2-3 libmpich2-dev
+                ;;
+            mpich|mpich3)
+                sudo apt-get install -y gfortran hwloc ccache
+                sudo /usr/sbin/update-ccache-symlinks
+                export PATH="/usr/lib/ccache:$PATH"
+                wget http://www.mpich.org/static/downloads/3.2.1/$MPICHVER.tar.gz
+                tar -zxf $MPICHVER.tar.gz
+                cd $MPICHVER
+                sh ./configure --prefix=$HOME/mpich --enable-shared > /dev/null
+                make -j > /dev/null
+                sudo make install > /dev/null
+                ;;
+            openmpi)
+                sudo apt-get install -y gfortran ccache
+                sudo /usr/sbin/update-ccache-symlinks
+                export PATH="/usr/lib/ccache:$PATH"
+                wget --no-check-certificate https://www.open-mpi.org/software/ompi/v3.0/downloads/$OMPIVER.tar.gz
+                tar -zxf $OMPIVER.tar.gz
+                cd $OMPIVER
+                sh ./configure --prefix=$HOME/openmpi > /dev/null
+                make -j > /dev/null
+                sudo make install > /dev/null
+                ;;
+            intelmpi)
+                wget http://registrationcenter-download.intel.com/akdlm/irc_nas/tec/15553/l_mpi_$IMPIVER.tgz
+                tar -xzf l_mpi_$IMPIVER.tgz
+                cd l_mpi_$IMPIVER
+                cat << EOF > intel.conf
+ACCEPT_EULA=accept
+CONTINUE_WITH_OPTIONAL_ERROR=yes
+PSET_INSTALL_DIR=${HOME}/intel
+CONTINUE_WITH_INSTALLDIR_OVERWRITE=no
+PSET_MODE=install
+ARCH_SELECTED=ALL
+COMPONENTS=;intel-conda-index-tool__x86_64;intel-comp-l-all-vars__noarch;intel-comp-nomcu-vars__noarch;intel-imb__x86_64;intel-mpi-rt__x86_64;intel-mpi-sdk__x86_64;intel-mpi-doc__x86_64;intel-mpi-samples__x86_64;intel-mpi-installer-license__x86_64;intel-conda-impi_rt-linux-64-shadow-package__x86_64;intel-conda-impi-devel-linux-64-shadow-package__x86_64;intel-mpi-psxe__x86_64;intel-psxe-common__noarch;intel-psxe-common-doc__noarch;intel-compxe-pset
+EOF
+                ./install.sh --silent intel.conf
+                ;;
+
+            *)
+                echo "Unknown MPI implementation: $MPI_IMPL"
+                exit 1
+                ;;
+        esac
+        ;;
+
+    *)
+        echo "Unknown operating system: $os"
+        exit 1
+        ;;
+esac