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rMiW: a R package for microscopy-based image analysis workflow

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rMiW: A R package for providing a microscopy-based image analysis workflow

Description

This package provides a workflow for pre-processing, analysis and deep learning for microscopy-based images.

Topics in this project

  • R language usage / Bioconductor

  • Keras/Tensorflow usage in R

  • Microscopy-based images, especially electron microscopy images

  • Providing workflows for microscopy-based image analysis

    • Image pre-processing (read, display, and resize etc)
    • Deep learning (DL) models for image analysis
    • Semantic segmentation for 2D/3D images using DL
  • Integrated usage with BioImageDBs

    • Future plan
      • Object recognition for microscopy images
      • Post-DL image processing
      • Multivariate analysis of cell image features

Getting started

Tutrials

License

Copyright (c) 2021 Satoshi Kume released under the Artistic License 2.0.

Cite

If any scientific publications derive from this project, you must cite:

Scientific paper is under preparation.

Authors

  • Satoshi Kume