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add proksee in metadata sep test line
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JeanMainguy committed Mar 11, 2024
1 parent df35cf0 commit 9cf6ce0
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2 changes: 1 addition & 1 deletion .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -177,7 +177,7 @@ jobs:
# Default separator is a pipe but a pipe is found in a value of metadata db1. That is why we use another separator here.
ppanggolin write_genomes -p mybasicpangenome/pangenome.h5 --output mybasicpangenome/genomes_outputs \
--genomes genome_names.fasta.head.list \
-f --gff --add_metadata --table --metadata_sep §
-f --gff --add_metadata --table --metadata_sep § --proksee
# Pipe separatore is found in metadata source db1. if we don't require this source then the writting with pipe is work fine.
ppanggolin write_genomes -p mybasicpangenome/pangenome.h5 --output mybasicpangenome/genomes_outputs_with_metadata -f --gff --proksee --table --add_metadata --metadata_sources db2 db3 db4
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