fix gh action command write_genomes

labgem · Nov 6, 2023 · 9e0cd6b · 9e0cd6b
1 parent 37e47c6
commit 9e0cd6b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -149,6 +149,6 @@ jobs:
         cd testingDataset
         head organisms.gbff.list | cut -f1  > organisms_names.gbff.head.list
 
-        ppanggolin write_genomes  -p myannopang/pangenome.h5 --output flat_genomes_from_file_org -f --anno organisms.gbff.head.list --gff  --organisms  organisms_names.gbff.head.list
+        ppanggolin write_genomes  -p myannopang/pangenome.h5 --output flat_genomes_from_file_org -f --anno organisms.gbff.list --gff  --organisms  organisms_names.gbff.head.list
 
         ppanggolin write_genomes  -p stepbystep/pangenome.h5 --output flat_genomes_from_cmdline_orgs --proksee --organisms GCF_006508185.1_ASM650818v1_genomic,GCF_002088315.1_ASM208831v1_genomic