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fix a bug in the visualization of the tile plot (the plot was empty) #141

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merged 1 commit into from
Nov 15, 2023
Merged

fix a bug in the visualization of the tile plot (the plot was empty) #141

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16 changes: 3 additions & 13 deletions ppanggolin/figures/tile_plot.py
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Original file line number Diff line number Diff line change
Expand Up @@ -107,13 +107,13 @@ def draw_tile_plot(pangenome: Pangenome, output: Path, nocloud: bool = False, di

logging.getLogger("PPanGGOLiN").info("Getting the gene name(s) and the number for each tile of the plot ...")
for node in ordered_nodes:
fam_order.append('\u200c' + node.name)
data = node.organisms
fam_order.append(node.name)
data = set(node.organisms)
binary_data.append([len(list(node.get_genes_per_org(org))) if org in data else numpy.nan for org in order_organisms])
text_data.append([("\n".join(map(str, node.get_genes_per_org(org))))
if org in data else numpy.nan for org in order_organisms])

xaxis_values = ['\u200c' + org.name for org in order_organisms]
xaxis_values = [org.name for org in order_organisms]

logging.getLogger("PPanGGOLiN").info("Done extracting names and numbers. Making the heatmap ...")

Expand Down Expand Up @@ -175,16 +175,6 @@ def draw_tile_plot(pangenome: Pangenome, output: Path, nocloud: bool = False, di
logging.getLogger("PPanGGOLiN").info("Drawing the figure itself...")

fig = go.Figure(data=[heatmap])

fig.add_trace(go.Scatter(x=dendro_org['icoord'],
y=dendro_org['dcoord'],
mode='lines',
line=dict(color='black'),
showlegend=False,
xaxis='x2',
yaxis='y'))


fig.update_layout(layout)
out_plotly.plot(fig, filename=output.as_posix() + "/tile_plot.html", auto_open=False)
logging.getLogger("PPanGGOLiN").info(f"Done with the tile plot : '{output / 'tile_plot.html'}' ")
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