Merge dev branch into master to release version 2.1.1 #272
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Add support for python 3.11 and 3.12
Handle Aragorn gene that exceed contig length
fix some typos in docs
Fix config outputs in workflow commands when set in config file
Write the gene families by ordering the cluster based on their size.
Handle case where a spotless pangenome is used in projection
a few minor code changes
some typos in source
Tiny doc fix and version update for release
Print a warning log when partition step fails
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This pull request merges the dev branch into the master branch to release version 2.1.1
The dev branch includes bug fixes which are detailed in the release note.