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Merge pull request #116 from leon-vv/improve-geom-documentation
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Improve geom documentation
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leon-vv authored Nov 17, 2024
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<main>
<article id="content">
<header>
<h1 class="title">Module <code>traceon.focus</code></h1>
</header>
<section id="section-intro">
<p>Module containing a single function to find the focus of a beam of electron trajecories.</p>
</section>
<section>
</section>
<section>
</section>
<section>
<h2 class="section-title" id="header-functions">Functions</h2>
<dl>
<dt id="traceon.focus.focus_position"><code class="name flex">
<span>def <span class="ident">focus_position</span></span>(<span>positions)</span>
</code></dt>
<dd>
<div class="desc"><p>Find the focus of the given trajectories (which are returned from <code><a title="traceon.tracing.Tracer.__call__" href="tracing.html#traceon.tracing.Tracer.__call__">Tracer.__call__()</a></code>).
The focus is found using a least square method by considering the final positions and velocities of
the given trajectories and linearly extending the trajectories backwards.</p>
<h2 id="parameters">Parameters</h2>
<dl>
<dt><strong><code>positions</code></strong> :&ensp;<code>iterable</code> of <code>(N,6) np.ndarray float64</code></dt>
<dd>Trajectories of electrons, as returned by <code><a title="traceon.tracing.Tracer.__call__" href="tracing.html#traceon.tracing.Tracer.__call__">Tracer.__call__()</a></code></dd>
</dl>
<h2 id="returns">Returns</h2>
<p>(3,) np.ndarray of float64, representing the position of the focus</p></div>
</dd>
</dl>
</section>
<section>
</section>
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<li><h3>Super-module</h3>
<ul>
<li><code><a title="traceon" href="index.html">traceon</a></code></li>
</ul>
</li>
<li><h3><a href="#header-functions">Functions</a></h3>
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<li><code><a title="traceon.focus.focus_position" href="#traceon.focus.focus_position">focus_position</a></code></li>
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