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machado v0.3.0

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@azneto azneto released this 04 Sep 17:45
· 387 commits to master since this release
319701a

https://pypi.org/project/machado/

Release Notes

New features

  • API: the API was updated to run OpenAPI rather than coreAPI
  • API: the API documentation was created using Swagger
  • API: new endpoints to retrieve feature information
  • feature.html: most cards are now getting the information from the API
  • settings.py: the new variable MACHADO_JBROWSE_TRACKS allows to set the jbrowse tracks

Improvements

  • feature.html: dbxrefs were included
  • feature.html: links to NCBI proteins were included
  • export TSV: organism info was included
  • tests: flake8 was included to perform static code analysis
  • tests: ubuntu focal and python 3.8 were included

Fixes

  • load_gff: fixes store_relationship call
  • load _gff: handles SignalP results from InterproScan analyses
  • load_coexpression_clusters: fixes function to use retrieve_feature_id
  • load_orthomcl: fixes function to use retrieve_feature_id
  • search_result.html: formats species using italic