Code

Add Blocked GZip Format (BGZF)#19

Code

Open

robegan21 wants to merge 14 commits intomadler:mastermadler/pigz:masterfrom JGI-Bioinformatics:AddBlockCompress-BGZipJGI-Bioinformatics/pigz:AddBlockCompress-BGZipCopy head branch name to clipboard

+592-61

Commits

Commits on Nov 2, 2014

• got most of the code for BGZF compliance entered, not working yet

  robegan21

  committed
  1d4c9c3

  Copy full SHA for 1d4c9c3

• now --bgzf compresses gzip compliant files

  robegan21

  committed
  d4591b8

  Copy full SHA for d4591b8

Commits on Nov 3, 2014

• reworked indent to be 4 spaces, not tab

  Show description for 42b4335
  robegan21

  committed
  42b4335

  Copy full SHA for 42b4335

• refactor put_bgzf_trailer_and_header

  robegan21

  committed
  c65384f

  Copy full SHA for c65384f

• added support for --bgzf in single threaded mode

  robegan21

  committed
  2f6b003

  Copy full SHA for 2f6b003

Commits on Nov 15, 2014

• added support for parallel decompress of --bgzf input files

  robegan21

  committed
  35727f2

  Copy full SHA for 35727f2

Commits on Nov 16, 2014

• got decompress on --bgzf working and tested

  robegan21

  committed
  c0885f8

  Copy full SHA for c0885f8

• added comments and removed debugging printf statements

  robegan21

  committed
  ea56a0a

  Copy full SHA for ea56a0a

• fixed some comments

  robegan21

  committed
  6623284

  Copy full SHA for 6623284

• fixed -t when archive is a BGZF

  robegan21

  committed
  9278884

  Copy full SHA for 9278884

• fixed spacing

  robegan21

  committed
  a9c6e3a

  Copy full SHA for a9c6e3a

• fixed -t to wait for last BGZF block to be processed

  robegan21

  committed
  82cc340

  Copy full SHA for 82cc340

Commits on Nov 17, 2014

• added extra checks for eof while reading and parsing gzip header structure

  robegan21

  committed
  83cb87c

  Copy full SHA for 83cb87c

Commits on Nov 18, 2014

• fixed 0 byte input file and -p 1 compress

  Show description for 8c92aa3
  robegan21

  committed
  8c92aa3

  Copy full SHA for 8c92aa3