v0.13.0

New year, new release!

What's Changed

• Martinize2 can now generate Go contact maps internally, rather than requiring users to rely on external webservers. For this, the semantic around the -go command line flags changed. Be sure to read the documentation and help!
  • internal go contact map by @csbrasnett in #643
• It's now possible to specify molecule names using the -name flag. This is particularly useful when coarse-graining a system consisting of multiple proteins one protein at-the-time.
  • Custom molname by @csbrasnett in #634
• The documentation now contains much better tutorials.
  • Martinize2 tutorials by @csbrasnett in #635
• Fix the generation of spurious #include statements in the top file when using the go model.
  • Go topol header fix by @csbrasnett in #637
• Add parameters for lipidated amino acids, developed by P. I. Koukos et al (10.1021/acs.jctc.3c00604). Be sure to always cite the papers martinize2 asks you to!
  • Lipidations by @fgrunewald in #651

Full Changelog: v0.12.0...v0.13.0