Update tests

mcwdsi · Feb 1, 2025 · fa66132 · fa66132
1 parent 6cd6573
commit fa66132
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Showing 2 changed files with 8 additions and 12 deletions.
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -15,17 +15,13 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - { python: "3.10", os: "ubuntu-latest", session: "pre-commit" }
-          - { python: "3.11", os: "ubuntu-latest", session: "mypy" }
-          - { python: "3.10", os: "ubuntu-latest", session: "mypy" }
+          - { python: "3.12", os: "ubuntu-latest", session: "pre-commit" }
           - { python: "3.12", os: "ubuntu-latest", session: "mypy" }
-          - { python: "3.11", os: "ubuntu-latest", session: "tests" }
-          - { python: "3.10", os: "ubuntu-latest", session: "tests" }
           - { python: "3.12", os: "ubuntu-latest", session: "tests" }
-          - { python: "3.11", os: "macos-latest", session: "tests" }
-          - { python: "3.10", os: "ubuntu-latest", session: "typeguard" }
-          - { python: "3.10", os: "ubuntu-latest", session: "xdoctest" }
-          - { python: "3.10", os: "ubuntu-latest", session: "docs-build" }
+          - { python: "3.12", os: "macos-latest", session: "tests" }
+          - { python: "3.12", os: "ubuntu-latest", session: "typeguard" }
+          - { python: "3.12", os: "ubuntu-latest", session: "xdoctest" }
+          - { python: "3.12", os: "ubuntu-latest", session: "docs-build" }
 
     env:
       NOXSESSION: ${{ matrix.session }}

diff --git a/src/bam2tensor/embedding.py b/src/bam2tensor/embedding.py
@@ -18,7 +18,7 @@ class GenomeMethylationEmbedding:
     This class helps identify CpG sites in a given .fasta file and stores
     methylation embedding information for each CpG site for analyzing .bam files.
 
-    Stored embedding information cached and stored in gzipped json files.
+    Stored embedding information is cached and stored in gzipped json files.
     """
 
     def __init__(
@@ -65,7 +65,7 @@ def __init__(
         # Store the CpG sites in a dict per chromosome
         self.cpg_sites_dict: dict[str, list[int]] = {}
 
-        # This is a dict of lists, where but each list contains a tuple of CpG ranges witin a window
+        # This is a dict of lists, where each list contains a tuple of CpG ranges within a window
         # Key: chromosome, e.g. "chr1"
         # Value: a list of tuples, e.g. [(0,35), (190,212), (1055,)]
         self.windowed_cpg_sites_dict: dict[str, list[tuple]] = {}
@@ -340,7 +340,7 @@ def embedding_to_genomic_position(
         Args
         ----------
         embedding_pos : int
-            The embedding position.
+            The embedding position, e.g. 3493
 
         Returns
         -------