Add missing ChEBI label script

mcwdsi · Jun 18, 2024 · 13fb3f0 · 13fb3f0
1 parent 313d56b
commit 13fb3f0
Showing 1 changed file with 20 additions and 0 deletions.
diff --git a/src/scripts/collect-chebi-labels.sql b/src/scripts/collect-chebi-labels.sql
@@ -0,0 +1,20 @@
+-- Collect labels from ChEBI terms that are not deprecated.
+DROP TABLE IF EXISTS label;
+CREATE TABLE label (
+    curie TEXT PRIMARY KEY,
+    label TEXT UNIQUE
+);
+
+INSERT OR IGNORE INTO label
+SELECT
+  subject AS curie,
+  object AS label
+FROM chebi
+WHERE predicate = 'rdfs:label'
+  AND subject NOT IN (
+    SELECT subject
+    FROM chebi
+    WHERE predicate = 'owl:deprecated'
+  );
+CREATE INDEX idx_label_label ON label(label);
+ANALYZE label;