Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fixes for normalization issues #214

Merged
merged 7 commits into from
Jan 17, 2025
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
11 changes: 5 additions & 6 deletions src/mrinufft/operators/interfaces/gpunufft.py
Original file line number Diff line number Diff line change
Expand Up @@ -590,12 +590,12 @@ def pipe(
The oversampling factor the volume shape
normalize: bool
Whether to normalize the density compensation.
We normalize such that the energy of PSF = 1
"""
if GPUNUFFT_AVAILABLE is False:
raise ValueError(
"gpuNUFFT is not available, cannot " "estimate the density compensation"
)
original_shape = volume_shape
volume_shape = (np.array(volume_shape) * osf).astype(int)
grid_op = MRIGpuNUFFT(
samples=kspace_loc,
Expand All @@ -607,11 +607,10 @@ def pipe(
max_iter=num_iterations
)
if normalize:
spike = np.zeros(volume_shape)
mid_loc = tuple(v // 2 for v in volume_shape)
spike[mid_loc] = 1
psf = grid_op.adj_op(grid_op.op(spike))
density_comp /= np.linalg.norm(psf)
test_op = MRIGpuNUFFT(samples=kspace_loc, shape=original_shape, **kwargs)
test_im = np.ones(original_shape, dtype=np.complex64)
test_im_recon = test_op.adj_op(density_comp * test_op.op(test_im))
density_comp /= np.mean(np.abs(test_im_recon))
return density_comp.squeeze()

def get_lipschitz_cst(self, max_iter=10, tolerance=1e-5, **kwargs):
Expand Down
Loading