Added record series schema (INCF#355)

* ADD record series * FIX case and removed unnecessary props * FIX schema name * ADD cell record series * FIX json syntax * FIX id of shape * FIX id of shape * FIX RecordSeries * FIX list of RecordMesure * removed the list thing * removed temp file * removed Travis before script * typo
miral2525 · Dec 2, 2019 · 57ef7b8 · 57ef7b8
1 parent 6a25811
commit 57ef7b8
Show file tree

Hide file tree

Showing 4 changed files with 212 additions and 3 deletions.
diff --git a/.travis.yml b/.travis.yml
@@ -5,8 +5,6 @@ matrix:
     install:
     - pip install pyshacl
     - pip install pytest
-    before_script:
-    - mv ~/virtualenv/python3.7/bin/owlrl.py ~/virtualenv/python3.7/bin/owlrl
     script:
     - pytest tests
 

diff --git a/shapes/neurosciencegraph/commons/quantitativevalue/schema.json b/shapes/neurosciencegraph/commons/quantitativevalue/schema.json
@@ -31,6 +31,18 @@
             {
               "datatype": "xsd:double"
             },
+            {
+              "datatype": "xsd:int"
+            },
+            {
+              "datatype": "xsd:long"
+            },
+            {
+              "datatype": "xsd:unsignedInt"
+            },
+            {
+              "datatype": "xsd:unsignedLong"
+            },
             {
               "datatype": "xsd:integer"
             }
@@ -137,4 +149,4 @@
       ]
     }
   ]
-}
+}
diff --git a/shapes/neurosciencegraph/datashapes/atlas/cellrecordseries/schema.json b/shapes/neurosciencegraph/datashapes/atlas/cellrecordseries/schema.json
@@ -0,0 +1,71 @@
+{
+  "@context": [
+    "https://incf.github.io/neuroshapes/contexts/schema.json",
+    {
+      "this": "https://neuroshapes.org/dash/cellrecordseries/shapes/"
+    }
+  ],
+  "@id": "https://neuroshapes.org/dash/cellrecordseries",
+  "@type": "nxv:Schema",
+  "imports": [
+    "https://neuroshapes.org/dash/recordseries",
+    "https://neuroshapes.org/commons/brainlocation",
+    "https://neuroshapes.org/commons/typedlabeledontologyterm"
+  ],
+  "shapes": [
+    {
+      "@id": "this:CellRecordSeriesShape",
+      "@type": "sh:NodeShape",
+      "label": "A Record Series for cells",
+      "targetClass": [
+        "nsg:RecordSeries",
+        "nsg:CellRecordSeries"
+      ],
+      "nodeKind": "sh:BlankNodeOrIRI",
+      "and": [
+        {
+          "node": "https://neuroshapes.org/dash/recordseries/shapes/RecordSeriesShape"
+        },
+        {
+          "property": [
+            {
+              "path": "nsg:mType",
+              "name": "Morphology type",
+              "description": "The morphology type of the reconstructed cell.",
+              "editorialNote": "Need the cell type for class restriction.",
+              "node": "https://neuroshapes.org/commons/typedlabeledontologyterm/shapes/CellTypeOntologyTermShape",
+              "maxCount": 1
+            },
+            {
+              "path": "nsg:isRegisteredIn",
+              "class": "nsg:BrainAtlasSpatialReferenceSystem",
+              "maxCount": 1
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "@id": "this:BrainLocationShape",
+      "@type": "sh:NodeShape",
+      "label": "A morphology release distribution shape.",
+      "nodekind": "sh:BlankNodeOrIRI",
+      "and": [
+        {
+          "node": "https://neuroshapes.org/commons/brainlocation/shapes/BrainLocationShape"
+        },
+        {
+          "property": [
+            {
+              "path": "nsg:atlasSpatialReferenceSystem",
+              "name": "Atlas Spatial Reference System",
+              "class": "nsg:BrainAtlasSpatialReferenceSystem",
+              "minCount": 1,
+              "maxCount": 1
+            }
+          ]
+        }
+      ]
+    }
+  ]
+}
diff --git a/shapes/neurosciencegraph/datashapes/atlas/recordseries/schema.json b/shapes/neurosciencegraph/datashapes/atlas/recordseries/schema.json
@@ -0,0 +1,128 @@
+{
+  "@context": [
+    "https://incf.github.io/neuroshapes/contexts/schema.json",
+    {
+      "this": "https://neuroshapes.org/dash/recordseries/shapes/"
+    }
+  ],
+  "@id": "https://neuroshapes.org/dash/recordseries",
+  "@type": "nxv:Schema",
+  "imports": [
+    "https://neuroshapes.org/commons/entity"
+  ],
+  "shapes": [
+    {
+      "@id": "this:RecordSeriesShape",
+      "@type": "sh:NodeShape",
+      "label": "Record Series",
+      "description": "Definition of a series of records, each record having measures. Files types for this purpose are usually CSV, TSV or binary buffers",
+      "targetClass": [
+        "nsg:RecordSeries"
+      ],
+      "nodeKind": "sh:BlankNodeOrIRI",
+      "and": [
+        {
+          "node": "https://neuroshapes.org/commons/entity/shapes/EntityShape"
+        },
+        {
+          "property": [
+
+            {
+              "path": "nsg:recordMeasure",
+              "name": "Record Measure",
+              "description": "List of measures performed or computed on a system",
+              "minCount": 1
+            },
+
+            {
+              "path": "nsg:numberOfRecords",
+              "name": "Number Of Records",
+              "description": "Number of record in this series",
+              "datatype": "xsd:long",
+              "minCount": 1
+            },
+
+            {
+              "path": "nsg:byteOffset",
+              "name": "Byte Offset",
+              "description": "Number of byte at the beginning of the file/buffer before the first measure or the first record. Mostly relevant for binary buffers as CSV would usually contain a header.",
+              "datatype": "xsd:long"
+            },
+
+            {
+              "path": "nsg:bufferEncoding",
+              "name": "Buffer Encoding",
+              "description": "Encoding used for the whole series, once uncompressed if any compression method was used.",
+              "in": [
+                "ascii",
+                "binary"
+              ],
+              "minCount": 1,
+              "maxCount": 1
+            },
+
+            {
+              "path": "nsg:endianness",
+              "name": "Endianness",
+              "description": "Endianness of the encoding, not applicable if buffer encoding is ascii",
+              "in": [
+                "little",
+                "big"
+              ],
+              "maxCount": 1
+            }
+
+          ]
+        }
+      ]
+    },
+
+    {
+      "@id": "this:RecordMeasureShape",
+      "@type": "sh:NodeShape",
+      "targetClass": "nsg:RecordMeasure",
+      "label": "Record Measure Shape",
+      "description": "A measure can be anything",
+      "property": [
+        {
+          "path": "schema:name",
+          "name": "Name",
+          "description": "Name of the measure",
+          "datatype": "xsd:string",
+          "minCount": 1,
+          "maxCount": 1
+        },
+
+        {
+          "path": "schema:description",
+          "name": "Description",
+          "description": "Description of what this measure is about",
+          "datatype": "xsd:string",
+          "maxCount": 1
+        },
+
+        {
+          "path": "nsg:componentEncoding",
+          "name": "Data Type",
+          "description": "Type of the value",
+          "minCount": 1,
+          "maxCount": 1,
+          "in": [
+            "ascii",
+            "uint8",
+            "int8",
+            "uint16",
+            "int16",
+            "uint32",
+            "int32",
+            "uint64",
+            "int64",
+            "float16",
+            "float32",
+            "float64"
+          ]
+        }
+      ]
+    }
+  ]
+}