dependency fixes #190
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.suffix }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # running Windows and Mac with --no-examples to avoid spurious Stan crashes in examples | |
| - {os: windows-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--no-examples"'} | |
| - {os: macOS-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--no-examples"'} | |
| - {os: ubuntu-latest, r: 'devel', suffix: '', not_cran: 'true', check_options: 'NULL', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release', suffix: '', not_cran: 'true', check_options: 'NULL', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: 'oldrel', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: '4.1', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: '4.0', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: '3.6', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| # - name: Install system dependencies | |
| # if: runner.os == 'Linux' | |
| # env: | |
| # RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| # run: | | |
| # Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
| # sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
| # sudo -s eval "$sysreqs" | |
| # sudo apt-get install jags cargo libudunits2-dev libgdal-dev | |
| # cargo: for gifski | |
| # libudunits2-dev for units (transformr) | |
| # libgdal-dev for sf (transformr) | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| NOT_CRAN: ${{ matrix.config.not_cran }} | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", ${{ matrix.config.check_options }}), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Test coverage | |
| if: matrix.config.r == 'release' && runner.os == 'Linux' && matrix.config.suffix == 'quick' | |
| run: covr::codecov() | |
| shell: Rscript {0} |