more ci fixes #199
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| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.suffix }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # running Windows and Mac with --no-examples to avoid spurious Stan crashes in examples | |
| - {os: windows-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes", "--no-examples"'} | |
| - {os: macOS-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes", "--no-examples"'} | |
| - {os: ubuntu-latest, r: 'devel', suffix: '', not_cran: 'true', check_options: 'NULL', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release', suffix: '', not_cran: 'true', check_options: 'NULL', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: 'oldrel', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: '4.1', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: '4.0', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: '3.6', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| Rscript -e "install.packages('pak')" | |
| sysreqs=$(Rscript -e "cat(pak::pkg_sysreqs('.')$install_scripts)") | |
| sudo -s eval "$sysreqs" | |
| # - uses: r-lib/actions/setup-r-dependencies@v2 | |
| # with: | |
| # extra-packages: | | |
| # any::rcmdcheck | |
| # any::BH | |
| # any::RcppEigen | |
| # any::Matrix@>=1.6-2 | |
| # emmeans=?ignore-before-r=4.3.0 | |
| # needs: check | |
| # | |
| # - name: Install dependencies | |
| # run: | | |
| # remotes::install_deps(dependencies = TRUE) | |
| # remotes::install_cran("rcmdcheck") | |
| # remotes::install_cran("pak") | |
| # shell: Rscript {0} | |
| # - name: Install system dependencies | |
| # run: | | |
| # pak::sysreqs_fix_installed() | |
| # remotes::install_cran("rcmdcheck") | |
| # remotes::install_cran("pak") | |
| # shell: Rscript {0} | |
| # | |
| # - name: Install system dependencies | |
| # if: runner.os == 'Linux' | |
| # env: | |
| # RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| # run: | | |
| # Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
| # sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
| # sudo -s eval "$sysreqs" | |
| # sudo apt-get install jags cargo libudunits2-dev libgdal-dev | |
| # cargo: for gifski | |
| # libudunits2-dev for units (transformr) | |
| # libgdal-dev for sf (transformr) | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| NOT_CRAN: ${{ matrix.config.not_cran }} | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", ${{ matrix.config.check_options }}), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Test coverage | |
| if: matrix.config.r == 'release' && runner.os == 'Linux' && matrix.config.suffix == 'quick' | |
| run: covr::codecov() | |
| shell: Rscript {0} |