bio-gappa: init at 0.8.4

Update pkgs/by-name/bi/bio-gappa/package.nix Co-authored-by: Aleksana <[email protected]> Update pkgs/by-name/bi/bio-gappa/package.nix Co-authored-by: Aleksana <[email protected]> Update pkgs/by-name/bi/bio-gappa/package.nix Co-authored-by: Aleksana <[email protected]> Fixed package name Update pkgs/by-name/bi/bio-gappa/package.nix Co-authored-by: Arne Keller <[email protected]> Update pkgs/by-name/bi/bio-gappa/package.nix Co-authored-by: Arne Keller <[email protected]> Reformatted with nixfmt-rfc-style
mkg20001 · Dec 17, 2024 · f82a739 · f82a739
1 parent 0bb416b
commit f82a739
Showing 1 changed file with 59 additions and 0 deletions.
diff --git a/pkgs/by-name/bi/bio-gappa/package.nix b/pkgs/by-name/bi/bio-gappa/package.nix
@@ -0,0 +1,59 @@
+{
+  lib,
+  stdenv,
+  fetchFromGitHub,
+  cmake,
+  autoconf,
+  pkg-config,
+  libz,
+  bzip2,
+  xz,
+}:
+
+stdenv.mkDerivation (finalAttrs: {
+  pname = "bio-gappa";
+  version = "0.8.4";
+
+  src = fetchFromGitHub {
+    owner = "lczech";
+    repo = "gappa";
+    rev = "v${finalAttrs.version}";
+    hash = "sha256-VAp9e5Cu3tTeWSOTZ8kPG1eOyocYZiJsy/s+MWbCMLI=";
+    fetchSubmodules = true;
+  };
+
+  nativeBuildInputs = [
+    cmake
+    pkg-config
+    autoconf
+  ];
+
+  buildInputs = [
+    libz
+    bzip2
+    xz
+  ];
+
+  installPhase = ''
+    runHook preInstall
+    mkdir -p $out/bin
+    install -Dm755 ../bin/gappa $out/bin/gappa
+    runHook postInstall
+  '';
+
+  meta = with lib; {
+    homepage = "https://github.com/lczech/gappa";
+    description = "Toolkit for analyzing and visualizing phylogenetic (placement) data";
+    longDescription = ''
+      gappa is a collection of commands for working with phylogenetic data. Its
+      main focus are evolutionary placements of short environmental sequences
+      on a reference phylogenetic tree. Such data are typically produced by
+      tools such as EPA-ng, RAxML-EPA or pplacer, and usually stored in jplace
+      files.
+    '';
+    platforms = platforms.all;
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ bzizou ];
+    mainProgram = "gappa";
+  };
+})