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Bugfix for linking petrinets (#870)
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## Summary of Changes

Fix for bug reported on #869

### Related issues

Resolves #869 e437b49
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github-actions[bot] committed Mar 27, 2024
1 parent a25d599 commit fc9fc3a
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2 changes: 1 addition & 1 deletion api/python/skema/img2mml/models/decoders/xfmer_decoder.html
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Expand Up @@ -365,7 +365,7 @@ <h3>Instance variables</h3>
<h3>Methods</h3>
<dl>
<dt id="skema.img2mml.models.decoders.xfmer_decoder.Transformer_Decoder.create_pad_mask"><code class="name flex">
<span>def <span class="ident">create_pad_mask</span></span>(<span>self, matrix: <built-in method tensor of type object at 0x7f756d35b500>, pad_token: int) ‑> <built-in method tensor of type object at 0x7f756d35b500></span>
<span>def <span class="ident">create_pad_mask</span></span>(<span>self, matrix: <built-in method tensor of type object at 0x7f7602b5b500>, pad_token: int) ‑> <built-in method tensor of type object at 0x7f7602b5b500></span>
</code></dt>
<dd>
<div class="desc"></div>
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2 changes: 1 addition & 1 deletion api/python/skema/img2mml/models/encoding/positional_encoding_for_xfmer.html
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Expand Up @@ -157,7 +157,7 @@ <h3>Class variables</h3>
<h3>Methods</h3>
<dl>
<dt id="skema.img2mml.models.encoding.positional_encoding_for_xfmer.PositionalEncoding.forward"><code class="name flex">
<span>def <span class="ident">forward</span></span>(<span>self, x: <built-in method tensor of type object at 0x7f756d35b500>) ‑> <built-in method tensor of type object at 0x7f756d35b500></span>
<span>def <span class="ident">forward</span></span>(<span>self, x: <built-in method tensor of type object at 0x7f7602b5b500>) ‑> <built-in method tensor of type object at 0x7f7602b5b500></span>
</code></dt>
<dd>
<div class="desc"><p>Defines the computation performed at every call.</p>
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23 changes: 12 additions & 11 deletions api/python/skema/metal/model_linker/skema_model_linker/linkers/index.html
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Expand Up @@ -279,18 +279,19 @@ <h3>Methods</h3>
def _generate_linking_sources(self, elements: Iterable[JsonNode]) -&gt; Dict[str, List[Any]]:
ret = defaultdict(list)
for name, val, ix in elements:
if (name == &#34;states&#34;) or (name == &#34;parameters&#34; and &#39;name&#39; in val):
key = val[&#39;name&#39;].strip()
lower_case_key = key.lower()
if val is not None:
if (name == &#34;states&#34;) or (name == &#34;parameters&#34; and &#39;name&#39; in val):
key = val[&#39;name&#39;].strip()
lower_case_key = key.lower()

if &#34;description&#34; in val:
ret[f&#34;{key}: {val[&#39;description&#39;]}&#34;] = val
else:
if lower_case_key in heuristics:
descs = heuristics[lower_case_key]
for desc in descs:
ret[f&#34;{key}: {desc}&#34;] = val
ret[key] = val
if &#34;description&#34; in val:
ret[f&#34;{key}: {val[&#39;description&#39;]}&#34;] = val
else:
if lower_case_key in heuristics:
descs = heuristics[lower_case_key]
for desc in descs:
ret[f&#34;{key}: {desc}&#34;] = val
ret[key] = val
# elif name == &#34;transitions&#34;:
# if &#34;description&#34; in val:
# ret[f&#34;{val[&#39;id&#39;].strip()}: {val[&#39;description&#39;]}&#34;] = val
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46 changes: 24 additions & 22 deletions api/python/skema/metal/model_linker/skema_model_linker/linkers/petrinet.html
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Expand Up @@ -40,18 +40,19 @@ <h1 class="title">Module <code>skema.metal.model_linker.skema_model_linker.linke
def _generate_linking_sources(self, elements: Iterable[JsonNode]) -&gt; Dict[str, List[Any]]:
ret = defaultdict(list)
for name, val, ix in elements:
if (name == &#34;states&#34;) or (name == &#34;parameters&#34; and &#39;name&#39; in val):
key = val[&#39;name&#39;].strip()
lower_case_key = key.lower()
if val is not None:
if (name == &#34;states&#34;) or (name == &#34;parameters&#34; and &#39;name&#39; in val):
key = val[&#39;name&#39;].strip()
lower_case_key = key.lower()

if &#34;description&#34; in val:
ret[f&#34;{key}: {val[&#39;description&#39;]}&#34;] = val
else:
if lower_case_key in heuristics:
descs = heuristics[lower_case_key]
for desc in descs:
ret[f&#34;{key}: {desc}&#34;] = val
ret[key] = val
if &#34;description&#34; in val:
ret[f&#34;{key}: {val[&#39;description&#39;]}&#34;] = val
else:
if lower_case_key in heuristics:
descs = heuristics[lower_case_key]
for desc in descs:
ret[f&#34;{key}: {desc}&#34;] = val
ret[key] = val
# elif name == &#34;transitions&#34;:
# if &#34;description&#34; in val:
# ret[f&#34;{val[&#39;id&#39;].strip()}: {val[&#39;description&#39;]}&#34;] = val
Expand Down Expand Up @@ -89,18 +90,19 @@ <h2 class="section-title" id="header-classes">Classes</h2>
def _generate_linking_sources(self, elements: Iterable[JsonNode]) -&gt; Dict[str, List[Any]]:
ret = defaultdict(list)
for name, val, ix in elements:
if (name == &#34;states&#34;) or (name == &#34;parameters&#34; and &#39;name&#39; in val):
key = val[&#39;name&#39;].strip()
lower_case_key = key.lower()
if val is not None:
if (name == &#34;states&#34;) or (name == &#34;parameters&#34; and &#39;name&#39; in val):
key = val[&#39;name&#39;].strip()
lower_case_key = key.lower()

if &#34;description&#34; in val:
ret[f&#34;{key}: {val[&#39;description&#39;]}&#34;] = val
else:
if lower_case_key in heuristics:
descs = heuristics[lower_case_key]
for desc in descs:
ret[f&#34;{key}: {desc}&#34;] = val
ret[key] = val
if &#34;description&#34; in val:
ret[f&#34;{key}: {val[&#39;description&#39;]}&#34;] = val
else:
if lower_case_key in heuristics:
descs = heuristics[lower_case_key]
for desc in descs:
ret[f&#34;{key}: {desc}&#34;] = val
ret[key] = val
# elif name == &#34;transitions&#34;:
# if &#34;description&#34; in val:
# ret[f&#34;{val[&#39;id&#39;].strip()}: {val[&#39;description&#39;]}&#34;] = val
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4 changes: 2 additions & 2 deletions api/rust/help.html
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@@ -1,2 +1,2 @@
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