chore(PyMixtComp): update pillow version to avoid security vulnerability #110
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| name: RMixtComp | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - staging | |
| paths: | |
| - 'MixtComp/**' | |
| - '!MixtComp/docs/**' | |
| - 'RMixtComp/**' | |
| - 'RMixtCompIO/**' | |
| - 'RMixtCompUtilities/**' | |
| - '.github/workflows/RMixtComp.yml' | |
| - '!**/README.md' | |
| pull_request: | |
| branches: | |
| - master | |
| - staging | |
| paths: | |
| - 'MixtComp/**' | |
| - '!MixtComp/docs/**' | |
| - 'RMixtComp/**' | |
| - 'RMixtCompIO/**' | |
| - 'RMixtCompUtilities/**' | |
| - '.github/workflows/RMixtComp.yml' | |
| - '!**/README.md' | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| shell: Rscript {0} | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(c(remotes::system_requirements("ubuntu", "22.04", "RMixtCompIO"), remotes::system_requirements("ubuntu", "22.04", package="curl")))') | |
| - name: Install RMixtCompIO dependencies | |
| working-directory: RMixtCompIO | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Copy MixtComp files | |
| working-directory: RMixtCompIO | |
| run: | | |
| make clean | |
| make updateLib | |
| - name: Compile Rcpp Attributes for RMixtCompIO | |
| working-directory: RMixtCompIO | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: Rcpp::compileAttributes() | |
| shell: Rscript {0} | |
| - name: Check RMixtCompIO | |
| working-directory: RMixtCompIO | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| working-directory: RMixtCompIO | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: RMixtCompIO/check | |
| - name: Install local RMixtCompIO | |
| working-directory: RMixtCompIO | |
| run: R CMD INSTALL --no-multiarch --with-keep.source . | |
| - name: Install RMixtCompUtilities dependencies | |
| working-directory: RMixtCompUtilities | |
| run: remotes::update_packages(setdiff(remotes::local_package_deps(pkgdir = ".", dependencies = TRUE), "RMixtCompIO")) | |
| shell: Rscript {0} | |
| - name: Check RMixtCompUtilities | |
| working-directory: RMixtCompUtilities | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| working-directory: RMixtCompUtilities | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: RMixtCompUtilities/check | |
| - name: Install local RMixtCompUtilities | |
| working-directory: RMixtCompUtilities | |
| run: R CMD INSTALL --no-multiarch --with-keep.source . | |
| - name: Install RMixtComp dependencies | |
| working-directory: RMixtComp | |
| run: remotes::update_packages(setdiff(remotes::local_package_deps(pkgdir = ".", dependencies = TRUE), c("RMixtCompIO", "RMixtCompUtilities"))) | |
| shell: Rscript {0} | |
| - name: Check RMixtComp | |
| working-directory: RMixtComp | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| working-directory: RMixtComp | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: RMixtComp/check |