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still issues with talus for VSD_010_L
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modenaxe committed Jun 5, 2023
1 parent 4dacb1d commit f562a89
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clear; clc; close all

% STAPLE library
addpath(genpath('STAPLE'));
addpath(genpath('../../STAPLE'))
% Additional libraries
addpath(genpath('C:\dev\matGeom')) % https://github.com/mattools/matGeom

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% Remove subjects with incomplete skeletal anatomy
vsdSubjects = vsdSubjects(cellfun(@(x) isempty(strfind(x,'cut off')), vsdSubjects.Comment),:); %#ok<STREMP>

for n_sub = 4%:size(vsdSubjects,1)
for n_sub = 1:size(vsdSubjects,1)
load(fullfile('VSD', 'Bones', [vsdSubjects.ID{n_sub} '.mat']),'B','M')
subFolder = fullfile(datasets_folder, ['VSD_' vsdSubjects.ID{n_sub}] , input_geom_format);
if ~isfolder(subFolder)
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tic

% create model folder if required
%% create model folder if required
if ~isfolder(output_models_folder); mkdir(output_models_folder); end

for n_d = 4%:numel(datasets)
for n_d = 1:numel(datasets)

% current dataset being processed
cur_dataset = datasets{n_d};
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