Link AIMS sample

.github/workflows/conda-build-lint-test.yml

@@ -28,17 +28,18 @@ jobs:
           activate-environment: "thor"
           auto-update-conda: true
           python-version: ${{ matrix.python-version }}
-      - name: Install dependencies (excluding adam_core since it is not available via conda)
+      - name: Install dependencies (excluding adam_core and quivr since they are not available via conda)
         run: |
-          tail +2 requirements.txt > requirements_conda.txt
+          tail +3 requirements.txt > requirements_conda.txt
           conda install -c defaults -c conda-forge -c astropy -c moeyensj --file requirements_conda.txt --yes
       - name: Update OBSCODE.dat
         run: |
           cd $CONDA_PREFIX/share/oorb && ./updateOBSCODE
           cp OBSCODE.dat $CONDA_PREFIX/share/openorb/OBSCODE.dat
-      - name: Install adam_core
+      - name: Install adam_core and quivr
         run: |
           pip install adam-core@git+https://github.com/B612-Asteroid-Institute/adam_core@main
+          pip install quivr>=0.7.1
       - name: Build and install
         run: pip install . --no-deps
       - name: Lint

.github/workflows/pip-build-integration-test.yml

@@ -0,0 +1,43 @@
+name: pip - Build and Integration Test
+
+on:
+  schedule:
+    # Run every day at 20:00 UTC
+    - cron: '0 20 * * * '
+
+jobs:
+  build-lint-test-coverage:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        python-version: ["3.10"]
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    steps:
+      - name: Checkout git repo
+        uses: actions/checkout@v3
+      - name: Get git tags
+        run:  git fetch --prune --unshallow --tags
+      - name: Set up miniconda
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          activate-environment: "thor"
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+      - name: Install openorb using conda
+        run: conda install -c defaults -c conda-forge openorb --yes
+      - name: Update OBSCODE.dat
+        run: |
+          cd $CONDA_PREFIX/share/oorb && ./updateOBSCODE
+          cp OBSCODE.dat $CONDA_PREFIX/share/openorb/OBSCODE.dat
+      - uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache: 'pip' # caching pip dependencies
+      - name: Build and install
+        run: pip install .[tests]
+      - name: Integration Tests
+        run: pytest . -m "integration"

.github/workflows/pip-build-lint-test-coverage.yml

@@ -44,8 +44,6 @@ jobs:
         run: pre-commit run --all-files
       - name: Test
         run: pytest . --cov --cov-report xml
-      - name: Integration Tests
-        run: pytest . -m "integration"
       - name: Coverage
         uses: coverallsapp/[email protected]
         with:

recipe/meta.yaml

@@ -11,27 +11,25 @@ requirements:
   host:
     - python {{ python }}
     - pip
-    - setuptools >=45
-    - setuptools_scm >=6.0
+    - setuptools >= 45
+    - setuptools_scm >= 6.0
     - wheel
   run:
     - python {{ python }}
+    - astropy >= 5.3.1
+    - astroquery
+    - difi
+    - healpy
+    - jax
     - numpy
-    - pyarrow >= 13.0.0
     - numba
     - pandas
-    - difi
-    - astropy
-    - astroquery
-    - scipy
+    - pyarrow >= 13.0.0
+    - pyyaml >= 5.1
+    - ray-default
     - scikit-learn
-    - pyyaml
-    - openorb
+    - scipy
     - spiceypy
-    - matplotlib
-    - seaborn
-    - plotly
-    - ipykernel
     - pytest
     - pytest-cov
     - pre-commit

requirements.txt

@@ -1,20 +1,23 @@
 adam-core @ git+https://github.com/B612-Asteroid-Institute/adam_core@main
+quivr >= 0.7.1
+astropy >= 5.3.1
+astroquery
+difi
+healpy
+jax
 numpy
-pyarrow>=13.0.0
 numba
+openorb
 pandas
-difi
-astropy>=5.3.1
-astroquery
-scipy
+pyarrow >= 13.0.0
+pyyaml >= 5.1
+ray-default
 scikit-learn
-healpy
-pyyaml>=5.1
-openorb
+scipy
 spiceypy
 pytest
 pytest-cov
 pre-commit
-setuptools>=45
+setuptools >= 45
 wheel
-setuptools_scm>=6.0
+setuptools_scm >= 6.0

setup.cfg

@@ -32,24 +32,21 @@ setup_requires =
     setuptools_scm >= 6.0
 install_requires =
     adam-core @ git+https://github.com/B612-Asteroid-Institute/adam_core@main
-    numpy
-    pyarrow >= 13.0.0
-    numba
-    pandas
-    difi
     astropy >= 5.3.1
     astroquery
-    jax
-    quivr>=0.7.1
-    scipy
-    scikit-learn
+    difi
     healpy
+    jax
+    numpy
+    numba
+    pandas
+    pyarrow >= 13.0.0
     pyyaml >= 5.1
+    quivr >= 0.7.1
+    ray[default]
+    scikit-learn
+    scipy
     spiceypy
-    matplotlib
-    seaborn
-    plotly
-    ipykernel
 
 [options.extras_require]
 tests =
@@ -68,6 +65,8 @@ test=pytest
 [tool:pytest]
 python_functions = test_*
 addopts = -m "not integration"
+markers =
+    integration: Mark a test as an integration test.
 
 [isort]
 profile = black