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@kdelange kdelange released this 08 Dec 12:22
· 197 commits to master since this release
4.1.0
76a6e10
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Learn about vigilant mode.

bugfixes:

  • moveAndCheckSamplesheet converts from dos/mac to unix format with sed commands (instead of a non existing mac2unix/dos2unix on the new machines)
  • moveAndCheckSamplesheet, when the samplesheet is a genomescan samplesheet certain (required for in house) columns of the samplesheet are not filled. For GS the check will be skipped

added:

  • capturingkit name to the projectname in DRAGEN data (PullAndProcessAnalysis.sh)

  • cleanup script that will cleanup data on tmp

  • cleaning up samplesheets on tmp (is being distributed over all clusters)

  • check in copyProjectDataToPrm that checks whether the rawdata is copied to prm

  • check in copyRawDataToPrm that will skip the splitting of the samplesheet per project when it is demultiplexing only

  • parsing the metrics file for the trendanalysis

  • new group config: umcg-pr.cfg

  • .discarde in atd and gd config, notification for a failed demultiplexing will be mailed

  • cleaning up code in startPipeline

  • updated some configs

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