You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
"these terms are similar to chebi roles, although the hierarchy is different (e.g. in chebi alkylating agent is under mutagen, and not under anti-neoplastic) @nicolevasilevsky is already doing work to axiomatize the chebi role ontology with https://github.com/obophenotype/chiro - for example, anti-neoplastic agent is defined as having a role that is realized by negatively regulating neoplastic activity
I suggest
we make a DP whereby we define X agent using the term X role from chebi
e.g. X agent = .. and has_role some ...
but note this will not give us the desired inferences, so we should compare the chebi roles with maxo. We can make requests for chebi to change if we like (link back to this ticket)
we coordinate on the axiomatization in chiro and in maxo. E.g presumably antineoplastic therapy will have some kind of link to mondo neoplasm. If there are a handful we can do manually. If there are many, then semi-automate"
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
-
Moving #126 to discussions.
"these terms are similar to chebi roles, although the hierarchy is different (e.g. in chebi alkylating agent is under mutagen, and not under anti-neoplastic)
@nicolevasilevsky is already doing work to axiomatize the chebi role ontology with https://github.com/obophenotype/chiro - for example, anti-neoplastic agent is defined as having a role that is realized by negatively regulating neoplastic activity
I suggest
we make a DP whereby we define X agent using the term X role from chebi
e.g. X agent = .. and has_role some ...
but note this will not give us the desired inferences, so we should compare the chebi roles with maxo. We can make requests for chebi to change if we like (link back to this ticket)
we coordinate on the axiomatization in chiro and in maxo. E.g presumably antineoplastic therapy will have some kind of link to mondo neoplasm. If there are a handful we can do manually. If there are many, then semi-automate"
Beta Was this translation helpful? Give feedback.
All reactions