remove refs to unavail pkgs

mschubert · Jan 7, 2023 · 180426d · 180426d
1 parent 69fd1bc
commit 180426d
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Showing 2 changed files with 2 additions and 5 deletions.
diff --git a/plot/matrix.r b/plot/matrix.r
@@ -32,7 +32,7 @@ cluster = function(df, formula, cols=TRUE, rows=TRUE, size=NULL, fill=NA) {
     df
 }
 
-#' Draws a matrix plot using ggplot::geom_tile or circle
+#' Draws a matrix plot using ggplot2::geom_tile or circle
 #'
 #' @param df       A data.frame containing the data
 #' @param formula  Formula of sort value ~ row + col

diff --git a/stats/batch.r b/stats/batch.r
@@ -18,10 +18,7 @@ combat = function(X, batch, covariate=NULL) {
 }
 
 dwd = function(X, batch) {
-    ll = .mat2list(X, subsets=batch)
-    esets = lapply(ll, ExpressionSet)
-    eset = inSilicoMerging::merge(esets, method="DWD")
-    exprs(eset)
+    stop("inSilicoMerging package no longer available on Bioconductor")
 }
 
 none = function(X, batch=NA) {