Code

Vdb 5864#1019

Code

Open

aboshkin wants to merge 56 commits intoengineeringncbi/sra-tools:engineeringfrom VDB-5864ncbi/sra-tools:VDB-5864Copy head branch name to clipboard

+1,995,605-2,420

Commits

Commits on Jan 7, 2025

• VDB-5845 collected all fastq/fasta test file into a test input set for qa-stats

  aboshkin

  committed
  ff33a4c

  Copy full SHA for ff33a4c

• VDB-5845 added unit test project

  aboshkin

  committed
  e5d151b

  Copy full SHA for e5d151b

Commits on Jan 8, 2025

• VDB-5845 minor refactoring

  aboshkin

  committed
  b031473

  Copy full SHA for b031473

• VDB-5847 saving work

  aboshkin

  committed
  37034d4

  Copy full SHA for 37034d4

• Added more cases

  durbrow

  committed
  4cf7979

  Copy full SHA for 4cf7979

• Fixed FASTQ parsing

  durbrow

  committed
  9b7fb83

  Copy full SHA for 9b7fb83

Commits on Jan 10, 2025

• Warning removal

  durbrow

  committed
  b433b23

  Copy full SHA for b433b23

• Leak removal

  durbrow

  committed
  ba090f1

  Copy full SHA for ba090f1

• Debugging threads

  durbrow

  committed
  a9e9ce9

  Copy full SHA for a9e9ce9

• Debugging threads

  durbrow

  committed
  d71cf91

  Copy full SHA for d71cf91

• VDB-5847 saving work

  aboshkin

  committed
  f2d49fe

  Copy full SHA for f2d49fe

Commits on Jan 13, 2025

• Handle empty sequence and quality in FASTQ

  durbrow

  committed
  31361c8

  Copy full SHA for 31361c8

• Changed length, should be 0-based

  durbrow

  committed
  82bffc1

  Copy full SHA for 82bffc1

• Changed length, should be 0-based

  durbrow

  committed
  fa79207

  Copy full SHA for fa79207

• Handle numeric quality in FASTQ

  durbrow

  committed
  92bd856

  Copy full SHA for 92bd856

• VDB-5847 saving work

  aboshkin

  committed
  35317cb

  Copy full SHA for 35317cb

Commits on Jan 14, 2025

• Removed handling of numeric qualities

  durbrow

  committed
  5b6e929

  Copy full SHA for 5b6e929

• VDB-5847 saving work

  aboshkin

  committed
  04b68dc

  Copy full SHA for 04b68dc

• Merge branch 'VDB-5845' into VDB-5847

  aboshkin

  committed
  2cc3b6f

  Copy full SHA for 2cc3b6f

• VDB-5847 done

  aboshkin

  committed
  eb6b5f1

  Copy full SHA for eb6b5f1

Commits on Jan 15, 2025

• VDB-5847 added mkdir actual to the test project

  aboshkin

  committed
  60675ce

  Copy full SHA for 60675ce

• VDB-5847 from bash to sh

  aboshkin

  committed
  f893271

  Copy full SHA for f893271

• VDB-5847 bashing the sh

  aboshkin

  committed
  dc65987

  Copy full SHA for dc65987

Commits on Jan 16, 2025

• Merge pull request #1005 from ncbi/VDB-5847

  Show description for 5d386cc
  aboshkin

  authored
  5d386cc

  Copy full SHA for 5d386cc

Commits on Jan 27, 2025

• Refactor

  durbrow

  committed
  d3b9f6b

  Copy full SHA for d3b9f6b

• Refactor

  durbrow

  committed
  d059502

  Copy full SHA for d059502

• Refactoring

  durbrow

  committed
  e6d72dd

  Copy full SHA for e6d72dd

• Merge from VDB-5857

  durbrow

  committed
  9d839e8

  Copy full SHA for 9d839e8

Commits on Jan 28, 2025

• VDB-5875 done

  aboshkin

  committed
  cd0bdc5

  Copy full SHA for cd0bdc5

• Promoting JSON ostream to shared

  durbrow

  committed
  ddc3d50

  Copy full SHA for ddc3d50

• VDB-5864 saving work

  aboshkin

  committed
  cb69832

  Copy full SHA for cb69832

Commits on Jan 29, 2025

• VDB-5845 manual patch

  aboshkin

  committed
  91ec14a

  Copy full SHA for 91ec14a

• VDB-5857 merge from VDB-5845

  aboshkin

  committed
  6e79299

  Copy full SHA for 6e79299

• VDB-5864 merged from VDB-5845

  aboshkin

  committed
  6ae058b

  Copy full SHA for 6ae058b

• VDB-5864 merged from VDB-5857

  aboshkin

  committed
  e0a0286

  Copy full SHA for e0a0286

Commits on Jan 31, 2025

• VDB-5864 saving work

  aboshkin

  committed
  e8cc893

  Copy full SHA for e8cc893

Commits on Feb 4, 2025

• VDB-5864 saving work

  aboshkin

  committed
  51cc73a

  Copy full SHA for 51cc73a

Commits on Feb 5, 2025

• VDB-5864 saving work

  aboshkin

  committed
  d21c770

  Copy full SHA for d21c770

Commits on Feb 12, 2025

• Changed to position major from base major

  durbrow

  committed
  aed40d8

  Copy full SHA for aed40d8

• Changed to position major from base major

  durbrow

  committed
  4bb33a4

  Copy full SHA for 4bb33a4

• Moved hashing to shared location; added SHA-2

  durbrow

  committed
  61567c1

  Copy full SHA for 61567c1

• Typo

  durbrow

  committed
  e62d64c

  Copy full SHA for e62d64c

Commits on Feb 20, 2025

• Fix array commas

  durbrow

  committed
  ef64bf1

  Copy full SHA for ef64bf1

• Merge branch 'VDB-5888' into VDB-5857

  aboshkin

  committed
  5b6ff9d

  Copy full SHA for 5b6ff9d

• Merge branch 'VDB-5888' into VDB-5864

  aboshkin

  committed
  9b250ce

  Copy full SHA for 9b250ce

• VDB-5864 saving work

  aboshkin

  committed
  42465fe

  Copy full SHA for 42465fe

• Refactored, moved to shared code

  durbrow

  committed
  31e7b42

  Copy full SHA for 31e7b42

Commits on Feb 21, 2025

• Merge branch 'engineering' into VDB-5864

  aboshkin

  committed
  bb7e59e

  Copy full SHA for bb7e59e

• VDB-5864 saving work

  aboshkin

  committed
  681bb74

  Copy full SHA for 681bb74

• Changed to make gcc 9.4 happy

  durbrow

  committed
  d63b053

  Copy full SHA for d63b053

• Merge branch 'VDB-5845' into VDB-5857

  aboshkin

  committed
  9b27078

  Copy full SHA for 9b27078

• Merge branch 'VDB-5857' into VDB-5864

  aboshkin

  committed
  c320bb1

  Copy full SHA for c320bb1

Commits on Feb 24, 2025

• VDB-5864 saving work

  aboshkin

  committed
  ac2d8f1

  Copy full SHA for ac2d8f1

• VDB-5864 saving work

  aboshkin

  committed
  adf86c0

  Copy full SHA for adf86c0

Commits on Feb 25, 2025

• VDB-5864 fixed tests

  aboshkin

  committed
  0dfb74e

  Copy full SHA for 0dfb74e

• VDB-5864 fixed more tests

  aboshkin

  committed
  f8c09d8

  Copy full SHA for f8c09d8