Make notebooks work with `bokeh>=3` and remove `bokeh<3` pin #8732

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Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag.

xz 5.6.2 is already installed and up-to-date. To reinstall 5.6.2, run: brew reinstall xz

autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf

libtool 2.4.7 is already installed and up-to-date. To reinstall 2.4.7, run: brew reinstall libtool

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