Register h.Vector serialization function with Bokeh in notebooks

neuronsimulator · Aug 28, 2024 · 15be227 · 15be227
1 parent 45a7e6c
commit 15be227
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Showing 3 changed files with 4 additions and 5 deletions.
diff --git a/docs/docs_requirements.txt b/docs/docs_requirements.txt
@@ -5,8 +5,7 @@ jupyter
 nbconvert
 myst_parser
 matplotlib
-# bokeh 3 seems to break docs notebooks
-bokeh<3
+bokeh
 # do not check import of next line
 ipython
 plotnine

diff --git a/docs/tutorials/ball-and-stick-1.ipynb b/docs/tutorials/ball-and-stick-1.ipynb
@@ -1066,9 +1066,11 @@
    "outputs": [],
    "source": [
     "from bokeh.io import output_notebook\n",
+    "from bokeh.core.serialization import Serializer",
     "import bokeh.plotting as plt\n",
     "\n",
-    "output_notebook()"
+    "output_notebook()",
+    "Serializer.register(h.Vector, lambda obj, serializer: [serializer.encode(item) for item in obj])"
    ]
   },
   {

diff --git a/nrn_requirements.txt b/nrn_requirements.txt
@@ -3,8 +3,6 @@ setuptools_scm
 setuptools<=70.3.0
 scikit-build
 matplotlib
-# bokeh 3 seems to break docs notebooks
-bokeh<3
 ipython
 cython
 packaging