Fix missing progress bar in new jupyter #725
Workflow file for this run
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| name: Test and Deploy | |
| on: [push, pull_request] | |
| jobs: | |
| run-unit-tests: | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 60 | |
| name: ubuntu-22.04 python 3.9 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.9 | |
| channels: conda-forge | |
| auto-activate-base: true | |
| - name: Map the Branch Name to a Conda Environment | |
| uses: neutrons/branch-mapper@modifiedMain | |
| id: envname | |
| with: | |
| prefix: "neutron-imaging" | |
| suffix-default: "-dev" | |
| - name: Install dependencies | |
| timeout-minutes: 60 | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --upgrade pip | |
| # NOTE: the selected action is using packages from main, which is | |
| # in compatible with those from conda-forge, a force update here | |
| # help to bypass this issue. | |
| conda update -n base --all -y | |
| conda env update -n base --file=conda/${{ steps.envname.outputs.name }}.yml | |
| conda install --yes --name base pytest | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| cd notebooks | |
| conda activate base | |
| python -m pytest tests/ | |
| trigger-deploy-conda-environment: | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 60 | |
| name: test-trigger-deploy-conda-environment | |
| if: ${{ github.ref_protected }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Get changed files | |
| id: changed-files | |
| uses: tj-actions/[email protected] | |
| # Find which conda environment file we should use for the deployment | |
| # branch `main` maps to `neutron-imaging` (YML file "conda/neutron-imaging.yml") | |
| # branch `next` (and any other branch) maps to `neutron-imaging-dev` | |
| - name: Map the Branch Name to a Conda Environment | |
| uses: neutrons/branch-mapper@modifiedMain | |
| id: envname | |
| with: | |
| prefix: "neutron-imaging" | |
| suffix-default: "-dev" | |
| - name: Extract branch name | |
| shell: bash | |
| run: echo "##[set-output name=branch;]$(echo ${GITHUB_REF#refs/heads/})" | |
| id: extract_branch | |
| - name: Trigger Deploy | |
| id: trigger | |
| env: | |
| CONDAENVFILE: 'conda/${{ steps.envname.outputs.name }}.yml' | |
| if: ${{ contains(steps.changed-files.outputs.all_changed_files, env.CONDAENVFILE) }} | |
| uses: eic/trigger-gitlab-ci@v2 | |
| with: | |
| url: https://code.ornl.gov | |
| token: ${{ secrets.GITLAB_TRIGGER_TOKEN_CONDA }} | |
| project_id: 11833 | |
| ref_name: main | |
| variables: | | |
| PLAY="update" | |
| CONDA_ENV="${{ steps.envname.outputs.name }}" | |
| CONDA_ENV_SOURCE="https://raw.githubusercontent.com/neutronimaging/python_notebooks/${{ steps.extract_branch.outputs.branch }}/conda/${{ steps.envname.outputs.name }}.yml" | |
| - name: Annotate commit | |
| if: ${{ steps.trigger.conclusion == 'success' }} | |
| uses: peter-evans/commit-comment@v2 | |
| with: | |
| body: | | |
| GitLab pipeline with CONDA_ENV=${{ steps.conda_env_name.outputs.name }} submitted for commit ${{ steps.trigger.outputs.web_url }} | |
| trigger-deploy-notebooks: | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 60 | |
| # only trigger deploys from protected branches | |
| if: ${{ github.ref_protected}} | |
| steps: | |
| - name: Map the Branch Name to a Notebook Collection | |
| uses: neutrons/branch-mapper@modifiedMain | |
| id: notebook_collection | |
| with: | |
| prefix: "IPTS_notebooks" | |
| suffix-default: "_testing" | |
| - name: Trigger deploy | |
| id: trigger | |
| uses: eic/trigger-gitlab-ci@v2 | |
| with: | |
| url: https://code.ornl.gov | |
| token: ${{ secrets.GITLAB_TRIGGER_TOKEN_NOTEBOOKS}} | |
| project_id: 11602 | |
| ref_name: main | |
| variables: | | |
| PLAY="imaging" | |
| EXTRAARGS="NOTEBOOK_COLLECTION_NAME=${{ steps.notebook_collection.outputs.name }}" | |
| - name: Annotate commit | |
| uses: peter-evans/commit-comment@v2 | |
| with: | |
| body: | | |
| GitLab pipeline with NOTEBOOK_COLLECTION_NAME=${{ steps.notebook_collection.outputs.name }} submitted for commit ${{ steps.trigger.outputs.web_url }} |