Update pre commit

[backmari]

Short description of the changes:

• Update .pre-commit-config.yaml and pyproject.toml to ignore notebooks
• Switch to ruff format to be in line with neutrons python project template
• run ruff formatting
• manually address lint errors or add noqa: comments where sensible to avoid changing functioning logic too much

Check list for the pull request

• I have read the [CONTRIBUTING]
• I have read the [CODE_OF_CONDUCT]
• [n/a] I have added tests for my changes
• [n/a] I have updated the documentation accordingly

Check list for the reviewer

• I have read the [CONTRIBUTING]
• I have verified the proposed changes
• best software practices
  • all internal functions have an underbar, as is python standard
  • clearly named variables (better to be verbose in variable names)
  • code comments explaining the intent of code blocks
• All the tests are passing
• The documentation is up to date
• code comments added when explaining intent

Manual test for the reviewer

References

[jmborr]

I think you need to undo the changes to the python notebooks because I doubt very much the linters are supposed to change that

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 58.49057% with 22 lines in your changes missing coverage. Please review.

Project coverage is 86.09%. Comparing base (3892a8a) to head (5197bb1).
Report is 3 commits behind head on next.

Files with missing lines	Patch %	Lines
src/drtsans/mono/biosans/api.py	0.00%	3 Missing ⚠️
src/drtsans/mono/gpsans/api.py	0.00%	3 Missing ⚠️
src/drtsans/detector.py	0.00%	2 Missing ⚠️
src/drtsans/files/log_h5_reader.py	0.00%	2 Missing ⚠️
src/drtsans/pixel_calibration.py	77.77%	2 Missing ⚠️
src/drtsans/tof/eqsans/correction_api.py	0.00%	2 Missing ⚠️
src/drtsans/determine_bins.py	0.00%	1 Missing ⚠️
src/drtsans/geometry.py	0.00%	1 Missing ⚠️
src/drtsans/mono/spice_data.py	0.00%	1 Missing ⚠️
src/drtsans/path.py	0.00%	1 Missing ⚠️
... and 4 more

Additional details and impacted files

@@            Coverage Diff             @@
##             next     #607      +/-   ##
==========================================
- Coverage   86.18%   86.09%   -0.10%     
==========================================
  Files          98       97       -1     
  Lines       10760    10742      -18     
==========================================
- Hits         9274     9248      -26     
- Misses       1486     1494       +8     

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[backmari]

I have reviewed this PR and approve. However, I can't approve since I opened the PR (but I did none of the work). @jmborr would you mind clicking the approve button for me?

Changes were made