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Merge pull request #51 from nf-core/dev #91

Merge pull request #51 from nf-core/dev

Merge pull request #51 from nf-core/dev #91

Workflow file for this run

name: nf-core linting
# This workflow is triggered on pushes and PRs to the repository.
# It runs the `nf-core lint` and markdown lint tests to ensure that the code meets the nf-core guidelines
on:
push:
pull_request:
release:
types: [published]
jobs:
Markdown:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions/setup-node@v2
- name: Install markdownlint
run: npm install -g markdownlint-cli
- name: Run Markdownlint
run: markdownlint ${GITHUB_WORKSPACE} -c ${GITHUB_WORKSPACE}/.github/markdownlint.yml
YAML:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v1
- uses: actions/setup-node@v1
with:
node-version: '10'
- name: Install yaml-lint
run: npm install -g yaml-lint
- name: Run yaml-lint
run: yamllint $(find ${GITHUB_WORKSPACE} -type f -name "*.yml")
nf-core:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- uses: actions/setup-python@v1
with:
python-version: '3.6'
architecture: 'x64'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install nf-core==1.9
- name: Run nf-core lint
run: nf-core lint ${GITHUB_WORKSPACE}