Merge pull request #51 from nf-core/dev #91
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name: nf-core linting | |
# This workflow is triggered on pushes and PRs to the repository. | |
# It runs the `nf-core lint` and markdown lint tests to ensure that the code meets the nf-core guidelines | |
on: | |
push: | |
pull_request: | |
release: | |
types: [published] | |
jobs: | |
Markdown: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: actions/setup-node@v2 | |
- name: Install markdownlint | |
run: npm install -g markdownlint-cli | |
- name: Run Markdownlint | |
run: markdownlint ${GITHUB_WORKSPACE} -c ${GITHUB_WORKSPACE}/.github/markdownlint.yml | |
YAML: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v1 | |
- uses: actions/setup-node@v1 | |
with: | |
node-version: '10' | |
- name: Install yaml-lint | |
run: npm install -g yaml-lint | |
- name: Run yaml-lint | |
run: yamllint $(find ${GITHUB_WORKSPACE} -type f -name "*.yml") | |
nf-core: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install Nextflow | |
run: | | |
wget -qO- get.nextflow.io | bash | |
sudo mv nextflow /usr/local/bin/ | |
- uses: actions/setup-python@v1 | |
with: | |
python-version: '3.6' | |
architecture: 'x64' | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install nf-core==1.9 | |
- name: Run nf-core lint | |
run: nf-core lint ${GITHUB_WORKSPACE} |