New hitselection code and acknowledgement

[metinyazar]

PR checklist

• [x ] This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the pipeline conventions in the contribution docs
• If necessary, also make a PR on the nf-core/crisprseq branch on the nf-core/test-datasets repository.
• Make sure your code lints (nf-core pipelines lint).
• Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
• Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[github-actions]

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

[mirpedrol]

Hi @metinyazar, I changed the target branch to dev.
Your branch is outdated so you will have to update it either from the button "Update branch" at the bottom this PR, or by running git pull upstream dev on your fork.
Let's see if tests pass after this 🙂

[mirpedrol]

LGTM, thanks!

[LaurenceKuhl]

Hi @metinyazar,

should we merge the PR ? :)

[metinyazar]

Hi, I am not sure about merging 😅 but I wrote it according to last version. If you think to go live maybe we can make littile arrangements and improvements too

[LaurenceKuhl]

I think you could update the changelog to describe your new implementation and improvements and if the tests pass we should be good to go

[mirpedrol]

is it ok if I merge this PR?

[mirpedrol]

I am going to merge it, as I think it's done. Shout if it's not ready, and we can always revert or open a follow-up PR. Thaks!