Updating samtools in svdb module (#4938)

nf-core · Feb 16, 2024 · ab50ca4 · ab50ca4
1 parent 25f2b00
commit ab50ca4
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/modules/nf-core/svdb/merge/environment.yml b/modules/nf-core/svdb/merge/environment.yml
@@ -6,4 +6,4 @@ channels:
 dependencies:
   - svdb=2.8.1
   # renovate: datasource=conda depName=bioconda/samtools
-  - samtools=1.16.1
+  - samtools=1.19.2
diff --git a/modules/nf-core/svdb/merge/main.nf b/modules/nf-core/svdb/merge/main.nf
@@ -3,8 +3,8 @@ process SVDB_MERGE {
     label 'process_medium'
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/mulled-v2-c8daa8f9d69d3c5a1a4ff08283a166c18edb0000:af6f8534cd538a85ff43a2eae1b52b143e7abd05-0':
-        'biocontainers/mulled-v2-c8daa8f9d69d3c5a1a4ff08283a166c18edb0000:af6f8534cd538a85ff43a2eae1b52b143e7abd05-0' }"
+        'https://depot.galaxyproject.org/singularity/mulled-v2-c8daa8f9d69d3c5a1a4ff08283a166c18edb0000:511069f65a53621c5503e5cfee319aa3c735abfa-0':
+        'biocontainers/mulled-v2-c8daa8f9d69d3c5a1a4ff08283a166c18edb0000:511069f65a53621c5503e5cfee319aa3c735abfa-0' }"
 
     input:
     tuple val(meta), path(vcfs)